Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   QMK09_RS03600 Genome accession   NZ_CP125383
Coordinates   678038..678475 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain SKBC1     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 673038..683475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS03575 (QMK09_03575) - 673536..674996 (+) 1461 WP_250540164.1 DUF4118 domain-containing protein -
  QMK09_RS03580 (QMK09_03580) - 675204..675350 (+) 147 WP_224168554.1 hypothetical protein -
  QMK09_RS03585 (QMK09_03585) uvrB 675452..677425 (-) 1974 WP_038816456.1 excinuclease ABC subunit UvrB -
  QMK09_RS03590 (QMK09_03590) - 677579..677809 (+) 231 WP_002852327.1 hypothetical protein -
  QMK09_RS03595 (QMK09_03595) - 677799..678041 (+) 243 WP_002854947.1 hypothetical protein -
  QMK09_RS03600 (QMK09_03600) Cj0683 678038..678475 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QMK09_RS03605 (QMK09_03605) priA 678457..680310 (+) 1854 WP_002866530.1 primosomal protein N' -
  QMK09_RS03610 (QMK09_03610) cipA 680320..681715 (-) 1396 Protein_701 DUF2972 domain-containing protein -
  QMK09_RS03615 (QMK09_03615) ispG 681861..682934 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=831726 QMK09_RS03600 WP_002852324.1 678038..678475(+) (Cj0683) [Campylobacter jejuni strain SKBC1]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=831726 QMK09_RS03600 WP_002852324.1 678038..678475(+) (Cj0683) [Campylobacter jejuni strain SKBC1]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1