Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | L6418_RS10260 | Genome accession | NZ_AP023423 |
| Coordinates | 2121041..2121988 (+) | Length | 315 a.a. |
| NCBI ID | WP_237246825.1 | Uniprot ID | A0AAN1XB68 |
| Organism | Sideroxyarcus emersonii strain MIZ01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2116041..2126988
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6418_RS10235 (MIZ01_2093) | - | 2116963..2117217 (-) | 255 | WP_237246821.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| L6418_RS10240 (MIZ01_2094) | coaD | 2117229..2117705 (-) | 477 | WP_237246822.1 | pantetheine-phosphate adenylyltransferase | - |
| L6418_RS10245 (MIZ01_2095) | rsmD | 2117702..2118241 (-) | 540 | WP_237248730.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| L6418_RS10250 (MIZ01_2096) | - | 2118238..2119608 (-) | 1371 | WP_237246823.1 | pitrilysin family protein | - |
| L6418_RS10255 (MIZ01_2097) | - | 2119598..2120959 (-) | 1362 | WP_237246824.1 | pitrilysin family protein | - |
| L6418_RS10260 (MIZ01_2098) | pilA | 2121041..2121988 (+) | 948 | WP_237246825.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| L6418_RS10265 (MIZ01_2099) | ftsE | 2122100..2122753 (+) | 654 | WP_237246826.1 | cell division ATP-binding protein FtsE | - |
| L6418_RS10270 (MIZ01_2100) | ftsX | 2122750..2123655 (+) | 906 | WP_237246827.1 | permease-like cell division protein FtsX | - |
| L6418_RS10275 (MIZ01_2101) | - | 2123782..2124237 (+) | 456 | WP_237246828.1 | bacteriohemerythrin | - |
| L6418_RS10280 (MIZ01_2102) | - | 2124295..2124753 (-) | 459 | WP_237246829.1 | Rrf2 family transcriptional regulator | - |
| L6418_RS10285 (MIZ01_2104) | - | 2124971..2125336 (+) | 366 | WP_237246830.1 | group 1 truncated hemoglobin | - |
| L6418_RS10290 (MIZ01_2105) | - | 2125351..2126355 (+) | 1005 | WP_269807808.1 | FAD-binding oxidoreductase | - |
| L6418_RS10295 (MIZ01_2106) | - | 2126518..2126703 (+) | 186 | WP_237246832.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 315 a.a. Molecular weight: 33575.68 Da Isoelectric Point: 6.5035
>NTDB_id=83171 L6418_RS10260 WP_237246825.1 2121041..2121988(+) (pilA) [Sideroxyarcus emersonii strain MIZ01]
MFSFLKKNPAGNDSSNWLARLTGSLARTGGQLSALLVPGGRIDEDLYEELETILITSDVGMDATRSLLADVRRTVKEQRL
TEAGQLKEALAHALLKLLQPLAQPLDVGTHTPFVIMLCGVNGAGKTTSIGKLAKHFQQQGKSVLLAAGDTFRAAAREQLM
EWGRRNDVTVIAQQSGDAAAVIFDAVQAAQARRIDVVLADTAGRLTTQAHLMEEIRKVKRVIAKALPDAPHEVLLVLDAN
TGQNALTQVKAFDDALQVTGLVLTKLDGTAKGGVIAAIAKAHPIPVRFIGVGEGLDDLRPFVAEDFVAALLGLED
MFSFLKKNPAGNDSSNWLARLTGSLARTGGQLSALLVPGGRIDEDLYEELETILITSDVGMDATRSLLADVRRTVKEQRL
TEAGQLKEALAHALLKLLQPLAQPLDVGTHTPFVIMLCGVNGAGKTTSIGKLAKHFQQQGKSVLLAAGDTFRAAAREQLM
EWGRRNDVTVIAQQSGDAAAVIFDAVQAAQARRIDVVLADTAGRLTTQAHLMEEIRKVKRVIAKALPDAPHEVLLVLDAN
TGQNALTQVKAFDDALQVTGLVLTKLDGTAKGGVIAAIAKAHPIPVRFIGVGEGLDDLRPFVAEDFVAALLGLED
Nucleotide
Download Length: 948 bp
>NTDB_id=83171 L6418_RS10260 WP_237246825.1 2121041..2121988(+) (pilA) [Sideroxyarcus emersonii strain MIZ01]
ATGTTTAGTTTCCTGAAAAAAAATCCAGCCGGCAACGATTCGTCCAACTGGCTGGCCCGCCTGACCGGAAGTCTGGCGCG
CACGGGTGGACAGCTTTCCGCGCTGCTGGTTCCTGGCGGCAGGATCGACGAAGACCTGTATGAAGAACTGGAAACCATTC
TCATCACCTCTGACGTGGGTATGGACGCGACGCGCTCGCTGCTTGCTGACGTACGCCGCACGGTGAAGGAACAACGCCTC
ACCGAGGCCGGCCAGCTGAAAGAGGCCCTGGCGCACGCCCTGCTCAAATTGCTGCAGCCGCTTGCGCAACCGCTGGATGT
CGGCACGCACACCCCCTTCGTCATCATGCTCTGCGGCGTGAACGGCGCAGGCAAGACCACCTCCATCGGCAAACTGGCCA
AACATTTCCAGCAGCAGGGCAAATCGGTGCTGCTGGCCGCTGGCGACACCTTCCGCGCAGCGGCACGCGAACAACTGATG
GAATGGGGCCGGCGCAACGATGTCACCGTCATCGCACAACAGAGCGGCGATGCCGCCGCGGTCATCTTCGACGCAGTGCA
GGCGGCGCAGGCGCGGCGCATCGACGTGGTGCTGGCTGACACCGCCGGACGCCTGACCACGCAGGCGCACCTGATGGAAG
AAATCAGGAAAGTGAAGCGCGTCATCGCCAAGGCCTTGCCCGATGCCCCGCATGAGGTATTGCTGGTGCTGGACGCCAAT
ACCGGACAGAACGCGCTGACACAGGTCAAGGCCTTCGACGATGCGCTGCAGGTAACCGGGCTGGTACTGACCAAGCTAGA
TGGCACCGCCAAGGGCGGCGTTATCGCGGCGATCGCCAAGGCCCACCCGATCCCCGTACGTTTCATCGGCGTGGGTGAAG
GGCTGGATGACCTGAGGCCGTTCGTGGCGGAGGATTTTGTTGCGGCATTGCTGGGACTTGAAGATTAA
ATGTTTAGTTTCCTGAAAAAAAATCCAGCCGGCAACGATTCGTCCAACTGGCTGGCCCGCCTGACCGGAAGTCTGGCGCG
CACGGGTGGACAGCTTTCCGCGCTGCTGGTTCCTGGCGGCAGGATCGACGAAGACCTGTATGAAGAACTGGAAACCATTC
TCATCACCTCTGACGTGGGTATGGACGCGACGCGCTCGCTGCTTGCTGACGTACGCCGCACGGTGAAGGAACAACGCCTC
ACCGAGGCCGGCCAGCTGAAAGAGGCCCTGGCGCACGCCCTGCTCAAATTGCTGCAGCCGCTTGCGCAACCGCTGGATGT
CGGCACGCACACCCCCTTCGTCATCATGCTCTGCGGCGTGAACGGCGCAGGCAAGACCACCTCCATCGGCAAACTGGCCA
AACATTTCCAGCAGCAGGGCAAATCGGTGCTGCTGGCCGCTGGCGACACCTTCCGCGCAGCGGCACGCGAACAACTGATG
GAATGGGGCCGGCGCAACGATGTCACCGTCATCGCACAACAGAGCGGCGATGCCGCCGCGGTCATCTTCGACGCAGTGCA
GGCGGCGCAGGCGCGGCGCATCGACGTGGTGCTGGCTGACACCGCCGGACGCCTGACCACGCAGGCGCACCTGATGGAAG
AAATCAGGAAAGTGAAGCGCGTCATCGCCAAGGCCTTGCCCGATGCCCCGCATGAGGTATTGCTGGTGCTGGACGCCAAT
ACCGGACAGAACGCGCTGACACAGGTCAAGGCCTTCGACGATGCGCTGCAGGTAACCGGGCTGGTACTGACCAAGCTAGA
TGGCACCGCCAAGGGCGGCGTTATCGCGGCGATCGCCAAGGCCCACCCGATCCCCGTACGTTTCATCGGCGTGGGTGAAG
GGCTGGATGACCTGAGGCCGTTCGTGGCGGAGGATTTTGTTGCGGCATTGCTGGGACTTGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
66.221 |
94.921 |
0.629 |