Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L6418_RS08040 Genome accession   NZ_AP023423
Coordinates   1646999..1648360 (-) Length   453 a.a.
NCBI ID   WP_237246405.1    Uniprot ID   A0AAN1XAQ0
Organism   Sideroxyarcus emersonii strain MIZ01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641999..1653360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6418_RS08020 (MIZ01_1637) - 1644153..1644488 (+) 336 WP_237246401.1 copper-binding protein -
  L6418_RS08025 (MIZ01_1638) - 1644555..1645253 (-) 699 WP_237246402.1 VIT family protein -
  L6418_RS08030 (MIZ01_1639) - 1645304..1645882 (-) 579 WP_237246403.1 TMEM175 family protein -
  L6418_RS08035 (MIZ01_1640) - 1645977..1646945 (-) 969 WP_237246404.1 cation diffusion facilitator family transporter -
  L6418_RS08040 (MIZ01_1641) radA 1646999..1648360 (-) 1362 WP_237246405.1 DNA repair protein RadA Machinery gene
  L6418_RS08045 (MIZ01_1642) - 1648420..1650033 (+) 1614 WP_237246406.1 NAD(P)/FAD-dependent oxidoreductase -
  L6418_RS08050 (MIZ01_1643) - 1650101..1650886 (+) 786 WP_237246407.1 YdiY family protein -
  L6418_RS08055 (MIZ01_1644) phnD 1651147..1652010 (+) 864 WP_237246408.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48357.69 Da        Isoelectric Point: 6.9170

>NTDB_id=83168 L6418_RS08040 WP_237246405.1 1646999..1648360(-) (radA) [Sideroxyarcus emersonii strain MIZ01]
MAKAKTIYSCTECGGQSPKWQGQCPNCGEWNTLVEAVAETASAAGKNRYSALAASGKLQQLAEVEASEVSRTPTGIAEFD
RVLGGGLVEGGVVLIGGDPGIGKSTLLLQALAHLATSRKVLYVSGEESAQQIALRAKRLALDASEVHLLPEIQLEKIQAA
VAHEKPDVVVIDSIQTVYSEQLTSAPGSVAQVRECAAQLTRIAKSAGVTMILVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSQHGTQVPGSCVMVTQEGTRPLLVEIQALLDDSHSPT
PRRLSLGLEQNRLAMLLAVLHRHAGIACFDQDVFINAVGGVKITEPGADLAVLLAIVSSLRNRPLPEKLVVFGEVGLAGE
VRPVQRGQERLKEAAKLGFTHAVIPKANAPRHKIEGMEIIAVERVEEAVEKIR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=83168 L6418_RS08040 WP_237246405.1 1646999..1648360(-) (radA) [Sideroxyarcus emersonii strain MIZ01]
ATGGCAAAAGCAAAAACGATCTACAGTTGCACCGAATGCGGCGGTCAATCGCCCAAGTGGCAAGGCCAATGCCCGAATTG
CGGCGAATGGAACACGCTGGTGGAAGCGGTGGCGGAAACCGCCTCTGCCGCAGGCAAGAACCGATACAGTGCCCTGGCGG
CATCGGGCAAATTGCAGCAGCTGGCCGAGGTGGAAGCAAGCGAAGTGTCGCGCACGCCGACCGGCATCGCCGAATTCGAC
CGCGTGCTGGGCGGCGGGCTGGTGGAGGGCGGGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACTTTGCT
ATTGCAGGCATTGGCGCACCTGGCGACGAGCCGGAAAGTGCTCTACGTCAGCGGCGAAGAGTCGGCACAGCAGATCGCGT
TGCGGGCAAAACGCCTGGCGCTGGACGCAAGCGAAGTGCACCTGCTGCCGGAGATCCAGCTGGAAAAGATCCAGGCCGCC
GTCGCGCACGAGAAGCCCGATGTCGTAGTGATCGACTCGATCCAGACCGTGTATTCCGAACAGTTGACCAGCGCACCGGG
TTCGGTGGCGCAGGTGCGCGAATGTGCGGCGCAGCTCACCCGCATCGCCAAGAGCGCCGGGGTGACCATGATCCTCGTCG
GCCATGTCACCAAGGAAGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCATATCGTCGATACCGTGCTGTATTTCGAGGGC
GACACCCATTCCAGTTTCCGCCTCATCCGCGCGTTCAAGAACCGTTTCGGCGCGGTGAACGAGCTCGGCGTGTTCGCCAT
GACCGAGAAGGGCTTGCGCGAAGTGAGCAATCCGTCTGCGCTGTTCCTGTCCCAGCACGGTACGCAGGTGCCCGGCTCCT
GCGTGATGGTCACGCAGGAAGGCACGCGGCCGCTGCTGGTCGAGATACAGGCGCTGCTCGACGACTCGCATTCGCCCACC
CCGCGTCGCCTGTCGCTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTTGCCGTGCTGCACCGCCATGCCGGCATCGC
CTGCTTCGACCAGGATGTGTTCATCAATGCGGTCGGCGGCGTGAAGATCACGGAGCCCGGTGCCGATCTTGCGGTGCTGC
TCGCCATCGTTTCCTCGCTGCGCAACCGTCCCTTGCCGGAAAAGCTGGTGGTGTTCGGCGAGGTTGGCCTGGCAGGCGAG
GTGCGCCCCGTGCAGCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGCTTTACCCATGCCGTCATCCCCAAGGC
CAATGCCCCCAGGCACAAGATCGAGGGCATGGAGATCATCGCGGTGGAGCGGGTGGAAGAAGCGGTGGAAAAGATCAGGT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-220)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.209

100

0.514
  radA Streptococcus mitis SK321

48.359

100

0.488
  radA Streptococcus mitis NCTC 12261

48.14

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.238

100

0.483
  radA Streptococcus pneumoniae D39

48.238

100

0.483
  radA Streptococcus pneumoniae Rx1

48.238

100

0.483
  radA Streptococcus pneumoniae R6

48.238

100

0.483

Multiple sequence alignment