Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   L6418_RS01650 Genome accession   NZ_AP023423
Coordinates   348625..350061 (-) Length   478 a.a.
NCBI ID   WP_237247744.1    Uniprot ID   A0AAN2BY17
Organism   Sideroxyarcus emersonii strain MIZ01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343625..355061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6418_RS01615 (MIZ01_0327) - 344405..345004 (-) 600 WP_237247737.1 flavin prenyltransferase UbiX -
  L6418_RS01620 (MIZ01_0328) - 345001..345537 (-) 537 WP_237247738.1 Gx transporter family protein -
  L6418_RS01625 (MIZ01_0329) - 345611..345979 (-) 369 WP_237247739.1 NusG domain II-containing protein -
  L6418_RS01630 (MIZ01_0330) rapZ 345983..346828 (-) 846 WP_237247740.1 RNase adapter RapZ -
  L6418_RS01635 (MIZ01_0331) hprK 346831..347766 (-) 936 WP_237247741.1 HPr(Ser) kinase/phosphatase -
  L6418_RS01640 (MIZ01_0332) - 347772..348227 (-) 456 WP_237247742.1 PTS sugar transporter subunit IIA -
  L6418_RS01645 (MIZ01_0333) hpf 348285..348608 (-) 324 WP_237247743.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  L6418_RS01650 (MIZ01_0334) rpoN/rpoN1 348625..350061 (-) 1437 WP_237247744.1 RNA polymerase factor sigma-54 Machinery gene
  L6418_RS01655 (MIZ01_0335) lptB 350093..350815 (-) 723 WP_237247745.1 LPS export ABC transporter ATP-binding protein -
  L6418_RS01660 (MIZ01_0336) lptA 350812..351408 (-) 597 WP_237247746.1 lipopolysaccharide transport periplasmic protein LptA -
  L6418_RS01665 (MIZ01_0337) lptC 351389..351976 (-) 588 WP_237247747.1 LPS export ABC transporter periplasmic protein LptC -
  L6418_RS01670 (MIZ01_0338) - 351976..352497 (-) 522 WP_237247748.1 HAD family hydrolase -
  L6418_RS01675 (MIZ01_0339) - 352497..353483 (-) 987 WP_237247749.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 53720.69 Da        Isoelectric Point: 4.7296

>NTDB_id=83161 L6418_RS01650 WP_237247744.1 348625..350061(-) (rpoN/rpoN1) [Sideroxyarcus emersonii strain MIZ01]
MKHSLQLRQSQQLMLTPQLQQAIKLLQLSTLEINQEAARLLDENPFLEREDDTTNQTYSGNSSTDTPAPSSSAESAPAEA
ESRDSDSSEWPEPSFSSSSSSSSSPDDEDDGYSEVAAEKPSMREHLLWELNMNPMDERDKKIVGLLIDALDENAYLSQPL
EEIAELLPPELDITLDDLETALVQLQHLDAPGIGARNLSECLSLQLRAMPEDLPGRELALAIVGQHLDLLAARDFNKLKK
ALRCDDNALRTAQDLIVHLQPKPGSAFEHRAADYVVPDVLVERHGGIWRARLNPEAMPRLRINQVYANILQQRNEKNAQE
MAGQLQEARWFIKNLQQRFETILRVAQAIVERQRQFFEHGDIAMRPLVLREIAEQLELHESTISRVTTQKFMLTPRGIYE
FKYFFGSGLATEAGGACSSTAIRALIKQLVSEEDAKHPLTDSRMSEILAQQGILVARRTVAKYREGMNILPVNLRKSL

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=83161 L6418_RS01650 WP_237247744.1 348625..350061(-) (rpoN/rpoN1) [Sideroxyarcus emersonii strain MIZ01]
ATGAAACACTCTCTCCAACTCAGGCAGTCCCAACAACTGATGCTCACGCCGCAGTTGCAGCAGGCTATCAAGCTGCTGCA
ACTGTCGACGCTCGAGATCAATCAGGAAGCGGCGCGCCTGCTGGACGAGAACCCCTTCCTCGAGCGCGAGGACGACACCA
CCAACCAGACGTACAGCGGTAACAGCAGCACCGACACGCCCGCCCCGTCCAGCAGCGCGGAAAGCGCCCCGGCCGAAGCG
GAATCGCGCGACAGCGACAGCAGCGAATGGCCGGAGCCGTCGTTCTCGTCCTCATCCTCCTCCTCCTCCAGCCCCGACGA
CGAAGACGACGGCTATTCCGAGGTGGCTGCCGAAAAACCCAGCATGCGCGAACACCTGCTGTGGGAACTGAACATGAACC
CGATGGACGAGCGCGACAAGAAGATCGTCGGCCTGCTCATCGATGCGCTGGACGAGAACGCCTACCTGTCGCAACCGCTG
GAAGAGATCGCCGAACTGCTGCCGCCGGAACTGGACATCACGCTGGACGACCTGGAAACGGCACTGGTGCAGTTGCAGCA
CCTCGATGCGCCCGGCATCGGCGCGCGCAACCTGAGCGAATGCCTGTCCCTGCAGCTGCGCGCCATGCCGGAAGACCTGC
CCGGCCGCGAACTGGCGTTGGCCATCGTCGGCCAGCACCTGGATCTGCTCGCCGCACGCGACTTCAACAAACTGAAGAAG
GCCCTGCGCTGCGACGACAATGCCCTGCGCACCGCACAGGATCTGATCGTCCACCTGCAGCCCAAGCCCGGCTCCGCGTT
CGAACACCGCGCAGCCGACTATGTCGTGCCGGACGTGCTGGTGGAACGCCACGGCGGCATCTGGCGCGCGCGGCTGAATC
CGGAAGCGATGCCGCGCCTGCGCATCAACCAGGTGTATGCCAACATCCTGCAGCAGCGCAACGAGAAGAACGCGCAGGAG
ATGGCCGGCCAGTTGCAGGAAGCGCGCTGGTTCATCAAGAACCTGCAGCAGCGTTTCGAGACCATCCTGCGCGTGGCGCA
GGCCATCGTCGAACGCCAGCGCCAGTTCTTCGAACACGGCGACATCGCCATGCGCCCGCTGGTGCTGCGCGAGATCGCCG
AGCAGCTCGAACTGCACGAATCCACCATTTCGCGGGTCACCACGCAGAAGTTCATGCTCACCCCGCGCGGCATCTACGAA
TTCAAGTATTTCTTCGGCAGCGGCCTCGCCACCGAAGCCGGGGGCGCCTGTTCTTCCACCGCCATCCGCGCACTCATCAA
GCAGCTGGTCAGCGAGGAAGATGCCAAACATCCGCTCACCGACAGTCGCATGTCCGAAATCCTGGCACAGCAGGGCATTT
TGGTCGCCCGCCGTACCGTGGCAAAATACCGCGAGGGAATGAACATCCTTCCGGTAAATCTTCGTAAATCACTCTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(113-306)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-476)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.663

100

0.567

Multiple sequence alignment