Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QMK55_RS05360 Genome accession   NZ_CP125378
Coordinates   1202977..1203612 (-) Length   211 a.a.
NCBI ID   WP_178082110.1    Uniprot ID   A0A2N7RES6
Organism   Pseudomonas sp. P8_229     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197977..1208612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK55_RS05325 (QMK55_05325) - 1198382..1198852 (-) 471 WP_102355394.1 (2Fe-2S)-binding protein -
  QMK55_RS05330 (QMK55_05330) murB 1199094..1200113 (-) 1020 WP_320328805.1 UDP-N-acetylmuramate dehydrogenase -
  QMK55_RS05335 (QMK55_05335) - 1200110..1200574 (-) 465 WP_016986041.1 low molecular weight protein-tyrosine-phosphatase -
  QMK55_RS05340 (QMK55_05340) kdsB 1200574..1201338 (-) 765 WP_102355392.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK55_RS05345 (QMK55_05345) - 1201335..1201520 (-) 186 WP_003174668.1 Trm112 family protein -
  QMK55_RS05350 (QMK55_05350) lpxK 1201542..1202552 (-) 1011 WP_320328806.1 tetraacyldisaccharide 4'-kinase -
  QMK55_RS05355 (QMK55_05355) - 1202552..1202980 (-) 429 WP_102355390.1 ExbD/TolR family protein -
  QMK55_RS05360 (QMK55_05360) exbB 1202977..1203612 (-) 636 WP_178082110.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK55_RS05365 (QMK55_05365) comA 1203714..1205948 (-) 2235 WP_320328807.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK55_RS05370 (QMK55_05370) - 1206084..1206602 (+) 519 WP_025112995.1 DUF2062 domain-containing protein -
  QMK55_RS05375 (QMK55_05375) - 1206757..1207536 (-) 780 WP_008087860.1 ABC transporter permease -
  QMK55_RS05380 (QMK55_05380) - 1207533..1208465 (-) 933 WP_102355386.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22945.05 Da        Isoelectric Point: 6.8768

>NTDB_id=831608 QMK55_RS05360 WP_178082110.1 1202977..1203612(-) (exbB) [Pseudomonas sp. P8_229]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRVNSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=831608 QMK55_RS05360 WP_178082110.1 1202977..1203612(-) (exbB) [Pseudomonas sp. P8_229]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAAGAAAAACTCAAGGAGTTGCGCGTCAACTCGCCGCTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCGCGGGTGATTCACGAGCTCGAACGCTACGT
CAACGCGCTGGGCACCATCGCCGCCATGTCGCCGTTGCTGGGCCTGTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCACCGGCTCCGGCATGACCACCAATGCTTCGGTACTGGCTGGCGGTATCTCCAAGGCGCTGATCACTACGGCG
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCACCGGTTCCTGCAACGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7RES6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834