Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   U0546_RS25065 Genome accession   NZ_CP139794
Coordinates   5101600..5102793 (-) Length   397 a.a.
NCBI ID   WP_021538956.1    Uniprot ID   -
Organism   Escherichia coli strain Nord8     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 5096600..5107793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0546_RS25055 (U0546_25055) - 5097551..5098867 (-) 1317 WP_004152344.1 restriction endonuclease subunit S -
  U0546_RS25060 (U0546_25060) - 5098864..5100891 (-) 2028 WP_004152345.1 type I restriction-modification system subunit M -
  U0546_RS25065 (U0546_25065) kpsS 5101600..5102793 (-) 1194 WP_021538956.1 capsule biosynthesis protein Regulator
  U0546_RS25070 (U0546_25070) - 5102828..5104855 (-) 2028 WP_021538955.1 capsular polysaccharide biosynthesis protein -
  U0546_RS25075 (U0546_25075) kdsB 5104852..5105592 (-) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U0546_RS25080 (U0546_25080) - 5105602..5107278 (-) 1677 WP_001305083.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 47325.70 Da        Isoelectric Point: 10.0815

>NTDB_id=831548 U0546_RS25065 WP_021538956.1 5101600..5102793(-) (kpsS) [Escherichia coli strain Nord8]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNWVYYGDVKKGLE

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=831548 U0546_RS25065 WP_021538956.1 5101600..5102793(-) (kpsS) [Escherichia coli strain Nord8]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTAGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGACACAATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGCCATGCTATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAACTGGACCAGCGTTATTATCTTGCTGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGATTAACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGATATTTATTGGTGAAGACACAGGTTAATTGGGTTTATTATGGGGATGTAAAGAAAGGGTTAGAATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.642

98.489

0.39