Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMK51_RS04240 Genome accession   NZ_CP125375
Coordinates   923333..924700 (+) Length   455 a.a.
NCBI ID   WP_258698985.1    Uniprot ID   -
Organism   Pseudomonas sp. P9_31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 918333..929700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK51_RS04215 (QMK51_04220) - 918616..919326 (-) 711 WP_320393241.1 autoinducer binding domain-containing protein -
  QMK51_RS04220 (QMK51_04225) - 919618..920394 (+) 777 WP_320393242.1 ferredoxin--NADP reductase -
  QMK51_RS04225 (QMK51_04230) mscL 920435..920848 (-) 414 WP_320393243.1 large-conductance mechanosensitive channel protein MscL -
  QMK51_RS04230 (QMK51_04235) katB 921134..922675 (+) 1542 WP_258698983.1 catalase KatB -
  QMK51_RS04235 (QMK51_04240) - 922733..923287 (+) 555 WP_258698984.1 ankyrin repeat domain-containing protein -
  QMK51_RS04240 (QMK51_04245) radA 923333..924700 (+) 1368 WP_258698985.1 DNA repair protein RadA Machinery gene
  QMK51_RS04245 (QMK51_04250) - 924829..925197 (-) 369 WP_258698986.1 PilZ domain-containing protein -
  QMK51_RS04250 (QMK51_04255) - 925354..927420 (+) 2067 WP_320393244.1 carbon starvation CstA family protein -
  QMK51_RS04255 (QMK51_04260) - 927435..927632 (+) 198 WP_007895266.1 YbdD/YjiX family protein -
  QMK51_RS04260 (QMK51_04265) yjiA 927794..928765 (+) 972 WP_258698988.1 GTPase -
  QMK51_RS04265 (QMK51_04270) - 928869..929564 (-) 696 WP_320393245.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48777.20 Da        Isoelectric Point: 6.8987

>NTDB_id=831533 QMK51_RS04240 WP_258698985.1 923333..924700(+) (radA) [Pseudomonas sp. P9_31]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGASAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=831533 QMK51_RS04240 WP_258698985.1 923333..924700(+) (radA) [Pseudomonas sp. P9_31]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGTTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACGCTGACCGAAACCATGGTGGAGAGTGGCGGCGCCTCAGCCCCCAGTGGTCGCACCGGTTGGACCG
GCCAGCAGGCACAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATTCCGCGTTTCTCCACAGCGTCCAGTGAGCTC
GATCGCGTACTGGGCGGCGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGTGATCCCGGCATCGGCAAGTCGACCAT
TCTGTTGCAAACCTTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTATGTCACCGGCGAAGAGTCTCAGCAGCAAGTGG
CCATGCGCGCCCGGCGGCTCGGCTTGCCTCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGGCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATTCAGACGATCTTCACCGAACAACTGCAATCGGCACC
CGGGGGCGTTTCCCAGGTGCGCGAAAGTGCGGCGTTGCTGGTGCGTTACGCCAAACAAAGCGGCACGGCGATTTTCCTCG
TGGGCCATGTCACCAAAGAAGGCGCGTTGGCCGGCCCCCGAGTGCTGGAGCACATGGTCGATACCGTTCTGTATTTCGAA
GGCGAATCCGATGGGCGCCTGCGTCTGCTGCGGGCGGTGAAAAACCGTTTCGGCGCGGTGAATGAATTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCAATTTTTCTCACCCGCGCTCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCAACGTGGGAAGGCACCCGACCGATGCTGGTGGAAGTCCAGGCCTTGGTGGATGACAGCCATTTGGCC
AACCCGCGCCGGGTAACGCTGGGGCTGGATCAGAATCGATTGGCGATGTTGCTGGCGGTGCTGCACCGCCATGGCGGCAT
TCCGACTCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGCGTGAAGGTTCTGGAAACAGCGTCCGACCTGGCCTTGA
TGGCGGCGGTCATGTCCAGTTTGCGCAACCGGCCACTGCCCCATGATCTGCTGGTGTTTGGTGAAGTCGGGTTGTCGGGT
GAAGTGCGCCCGGTACCGAGTGGCCAGGAGCGCTTGAAAGAGGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCGCCCAAAGAGGCACCACCGGGGTTGCAGATTATTGCCGTGACCCGCCTGGAACAGGCGCTCGATGCGTTGT
TCGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466