Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMK48_RS25350 Genome accession   NZ_CP125374
Coordinates   5697706..5698227 (-) Length   173 a.a.
NCBI ID   WP_003206078.1    Uniprot ID   A0A0F4XIB0
Organism   Pseudomonas sp. P9_32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5692706..5703227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK48_RS25335 (QMK48_25330) - 5693873..5695798 (+) 1926 WP_320389529.1 MAC/perforin domain-containing protein -
  QMK48_RS25340 (QMK48_25335) - 5695970..5696824 (+) 855 WP_320389530.1 hypothetical protein -
  QMK48_RS25345 (QMK48_25340) - 5697085..5697576 (+) 492 WP_258689520.1 hypothetical protein -
  QMK48_RS25350 (QMK48_25345) ssb 5697706..5698227 (-) 522 WP_003206078.1 single-stranded DNA-binding protein Machinery gene
  QMK48_RS25355 (QMK48_25350) - 5698237..5699634 (-) 1398 WP_018612247.1 MFS transporter -
  QMK48_RS25360 (QMK48_25355) uvrA 5699814..5702648 (+) 2835 WP_253469856.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19281.47 Da        Isoelectric Point: 5.9455

>NTDB_id=831518 QMK48_RS25350 WP_003206078.1 5697706..5698227(-) (ssb) [Pseudomonas sp. P9_32]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPAPRQQAPRPQSAPQPQRERPAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=831518 QMK48_RS25350 WP_003206078.1 5697706..5698227(-) (ssb) [Pseudomonas sp. P9_32]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCGAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCTGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAG
GGCAAGTTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAGCAACAAGGTGGCAACAACTACCAGCAGTCGGCTCCGGCCCCGC
GTCAACAGGCGCCTCGTCCGCAGTCGGCGCCACAGCCACAGCGCGAACGCCCGGCCCCACAACAGGCCGCGCCGCAACCG
GCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F4XIB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.044

100

0.59
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.509
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.509
  ssb Neisseria meningitidis MC58

48.045

100

0.497