Detailed information NTG0831518

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: U0546_RS19900
• Genome accession: NZ_CP139794
• Coordinates: 4037073..4038098 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain Nord8
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4032073..4043098

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0546_RS19880 (U0546_19880)	metJ	4033258..4033575 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
U0546_RS19885 (U0546_19885)	yiiX	4033635..4034243 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
U0546_RS19890 (U0546_19890)	rpmE	4034304..4034516 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
U0546_RS19895 (U0546_19895)	priA	4034719..4036917 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
U0546_RS19900 (U0546_19900)	cytR	4037073..4038098 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
U0546_RS19905 (U0546_19905)	ftsN	4038190..4039149 (+)	960	WP_000068834.1	cell division protein FtsN	-
U0546_RS19910 (U0546_19910)	hslV	4039243..4039773 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
U0546_RS19915 (U0546_19915)	hslU	4039783..4041114 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
U0546_RS19920 (U0546_19920)	menA	4041181..4042107 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
U0546_RS19925 (U0546_19925)	rraA	4042200..4042685 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
U0546_RS19930 (U0546_19930)	zapB	4042770..4043015 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=831518 U0546_RS19900 WP_000644908.1 4037073..4038098(+) (cytR) [Escherichia coli strain Nord8]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=831518 U0546_RS19900 WP_000644908.1 4037073..4038098(+) (cytR) [Escherichia coli strain Nord8]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625