Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   HX0037_RS18995 Genome accession   NZ_CP139782
Coordinates   3824625..3826403 (+) Length   592 a.a.
NCBI ID   WP_070081962.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3819625..3831403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS18940 - 3819930..3820133 (+) 204 WP_003153779.1 DUF6501 family protein -
  HX0037_RS18945 - 3820199..3820339 (+) 141 WP_003153781.1 DUF4025 domain-containing protein -
  HX0037_RS18950 - 3820633..3820977 (+) 345 WP_003153783.1 PH domain-containing protein -
  HX0037_RS18955 - 3821022..3821255 (-) 234 WP_003153785.1 hypothetical protein -
  HX0037_RS18960 - 3821252..3821524 (-) 273 WP_003153786.1 hypothetical protein -
  HX0037_RS18965 - 3821595..3822077 (+) 483 WP_094246848.1 Hsp20/alpha crystallin family protein -
  HX0037_RS18970 - 3822064..3822297 (-) 234 WP_014305194.1 hypothetical protein -
  HX0037_RS18975 gerPC 3822390..3822770 (+) 381 WP_094246849.1 spore germination protein GerPC -
  HX0037_RS18980 - 3822855..3823346 (+) 492 WP_094246850.1 TraR/DksA family transcriptional regulator -
  HX0037_RS18985 - 3823491..3824117 (+) 627 WP_094246851.1 FMN-dependent NADH-azoreductase -
  HX0037_RS18995 recQ 3824625..3826403 (+) 1779 WP_070081962.1 DNA helicase RecQ Machinery gene
  HX0037_RS19000 - 3826639..3827511 (+) 873 WP_003153795.1 3D domain-containing protein -
  HX0037_RS19005 - 3827673..3828065 (+) 393 WP_094247879.1 hypothetical protein -
  HX0037_RS19010 - 3828097..3829074 (-) 978 WP_077722447.1 S66 peptidase family protein -
  HX0037_RS19015 - 3829138..3829641 (-) 504 WP_014305189.1 N-acetyltransferase -
  HX0037_RS19020 - 3829830..3830612 (+) 783 WP_031379041.1 VLRF1 family aeRF1-type release factor -
  HX0037_RS19025 - 3830757..3831293 (+) 537 WP_003153801.1 DUF420 domain-containing protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66929.46 Da        Isoelectric Point: 6.4509

>NTDB_id=831465 HX0037_RS18995 WP_070081962.1 3824625..3826403(+) (recQ) [Bacillus amyloliquefaciens strain HX0037]
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGVAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYEKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGENEAEACEACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPFVVFSDQTLKEMSAKLPKTDQ
DLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=831465 HX0037_RS18995 WP_070081962.1 3824625..3826403(+) (recQ) [Bacillus amyloliquefaciens strain HX0037]
ATGCTGGATAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGACAGTCTTCGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTGCAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTGCTGTTTGAAGGAACCACAATCGTTATTTCCCCTCTTATTTCTTTAATGAAAGATCAAGTGGACGCGCTTGAAGAA
GCGGGTGTCGCGGCAGCTTATATTAACAGCACCCAGACAAGCCGTGACATTCATGAGCGCCTGACCGGTTTGAAACAAGG
GGCTTACCGGCTCTTTTACATCACACCGGAGCGTTTGACTTCTTCTGAATTCATTCACATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATTGACGAAGCTCACTGTATATCGCAATGGGGACATGATTTCAGGCCGAGTTACCGGAATATCGAAATC
CTTTTTAATGAATTAAAAGAACCGCCCGTCATCATCGCCTTAACGGCGACGGCTACGCCTGAGGTTCATGATGACATCTG
CAAGCAGCTTCATATTAAGAAAGAACAAACTGTATATACCGGTTTTGCCAGAGAGAATTTAACGTTTAAAGTAGTAAAGG
GCGAAAACAAAGACCGGTTTATCGAGCGGTACCTCGAAAAAAATAAACACGAAGCCGGCATTATATATACAGCGACAAGA
AAAGAAACCGACCGTTTATATGAGAAATTAAAACGCAGCGGCATCAATGCCGGCCGTTATCACGGCGGATTGGCGGATGA
TGACAGAAAAGACCAGCAGGAGCGTTTTCTTAACGATCAGATACAAGTGATGGTAGCTACGTCCGCTTTCGGAATGGGAA
TCGATAAGAGCAACATCAGGTTTGTTTTACACGCGCAGATCCCGAAAGATATGGAGAGCTATTACCAGGAAGCCGGACGG
GCCGGACGCGACGGCCTTAACAGCGAGTGTGTGCTCTTATTTTCGCCGCAGGATATTATGGTGCAGCGTTTTTTAATAGA
CCAATCGGCCGCCGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAATGAGGCGGAAGCTTGCGAAGCATGCGGCAATTGCACTGAT
ACAAGGACCGCCCATGACGTCACAAAAGAAGCGCAGATGGTATTGTCATGCATCATCAGAATGAATGAGCGCTTCGGAAA
AACGATGGTGGCGCAGGTGCTTAGCGGGTCTAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACTTACG
GCATTATGAAGCATCAATCCGCAGCGGAAATCAGTGATTTTATCGAATTTCTTATTTCAGACGAATATATCAGAATGGCG
GACGGCACATTTCCGACGCTTATGGTCACCCAAAAAGGCAGGGACGTCCTGCTTGGAAAAAGCGCAGTCGCGAGAAAAGA
AGCCTTACAGGCCGCCGCCGTTACCGAAAATGATGAATTATTTGAGCTTCTCCGGCGTCTCCGCAAAGAGATTGCAGCTG
AACAGGGTGTTCCTCCATTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCGGCGAAACTTCCGAAAACAGATCAG
GATCTTCTTTCCGTAAAAGGGGTCGGGGAACAAAAAAGATTGAAATACGGAGCGGTTTTTTTAGAAGAAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(519-584)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)

RQC domain (RQC)

(404-508)

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(217-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

82.095

100

0.821