Detailed information NTG0831464

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: HX0037_RS18600
• Genome accession: NZ_CP139782
• Coordinates: 3759660..3760796 (-)
• Length: 378 a.a.
• NCBI ID: WP_094247857.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain HX0037
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3754660..3765796

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HX0037_RS18570	-	3754760..3755194 (+)	435	WP_088412337.1	SMI1/KNR4 family protein	-
HX0037_RS18575	-	3755231..3757030 (+)	1800	WP_094247855.1	T7SS effector LXG polymorphic toxin	-
HX0037_RS18580	-	3757046..3757504 (+)	459	WP_094247856.1	SMI1/KNR4 family protein	-
HX0037_RS18585	-	3757717..3758076 (+)	360	WP_003153654.1	hypothetical protein	-
HX0037_RS18590	-	3758136..3759161 (-)	1026	Protein_3612	hypothetical protein	-
HX0037_RS18595	-	3759488..3759670 (-)	183	WP_003153655.1	hypothetical protein	-
HX0037_RS18600	rapC	3759660..3760796 (-)	1137	WP_094247857.1	Rap family tetratricopeptide repeat protein	Regulator
HX0037_RS18605	-	3761147..3761599 (+)	453	WP_094247858.1	hypothetical protein	-
HX0037_RS18610	-	3761838..3762212 (-)	375	WP_094247859.1	YoqO family protein	-
HX0037_RS18615	-	3762336..3762572 (-)	237	WP_063636671.1	hypothetical protein	-
HX0037_RS18620	-	3763014..3763349 (+)	336	WP_223883510.1	DUF3221 domain-containing protein	-
HX0037_RS18625	sprB	3763700..3763876 (+)	177	WP_094247860.1	recombination directionality factor SprB	-
HX0037_RS18630	-	3763841..3764335 (-)	495	WP_258570277.1	SDR family NAD(P)-dependent oxidoreductase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 44612.18 Da
• Isoelectric Point: 4.8529

>NTDB_id=831464 HX0037_RS18600 WP_094247857.1 3759660..3760796(-) (rapC) [Bacillus amyloliquefaciens strain HX0037]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKGEIEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVDGKQVCEQGLMLSKELNDDVLGKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=831464 HX0037_RS18600 WP_094247857.1 3759660..3760796(-) (rapC) [Bacillus amyloliquefaciens strain HX0037]
TTGGAGCAATTGATCTCTTCTTCAAAGGTTGGCTTAAAAATCAATGAATGGTACAAATATATAAGATTATTCAGTGTTGC
AGATGCAGAAATTCTAAAGGGTGAAATTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGATTTATTGTTGTACTACT
CTCTCATGTGTTTTCGACATCAATTAATGCTTGATTACCTTGAACCAAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATCCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATTGTTCAAGCAATAGAAACCTACAAAGCACACGAGACATACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCACGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTATTCAACACGGTTGATGGAAAACAGGTTTGTGAACAAGGTCTTATGCTGTCAAAGG
AGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (191-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	46.561	100	0.466
rapF	Bacillus subtilis subsp. subtilis str. 168	45.932	100	0.463