Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   HX0037_RS14785 Genome accession   NZ_CP139782
Coordinates   3009019..3009723 (+) Length   234 a.a.
NCBI ID   WP_014418670.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3004019..3014723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS14765 - 3004505..3005770 (-) 1266 WP_003152311.1 NAD(P)/FAD-dependent oxidoreductase -
  HX0037_RS14770 - 3005977..3007614 (+) 1638 WP_071391475.1 polysaccharide biosynthesis protein -
  HX0037_RS14775 - 3007671..3008390 (+) 720 WP_007408795.1 pseudouridine synthase -
  HX0037_RS14780 - 3008518..3008739 (-) 222 WP_003152337.1 DeoR family transcriptional regulator -
  HX0037_RS14785 pptA 3009019..3009723 (+) 705 WP_014418670.1 ABC transporter ATP-binding protein Regulator
  HX0037_RS14790 - 3009720..3010880 (+) 1161 WP_094247642.1 ABC transporter permease -
  HX0037_RS14795 - 3010913..3012217 (-) 1305 WP_070082232.1 NCS2 family permease -
  HX0037_RS14800 pepV 3012313..3013704 (+) 1392 WP_191073203.1 dipeptidase PepV -
  HX0037_RS14805 cysK 3013741..3014712 (-) 972 WP_094247644.1 cysteine synthase A -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25726.43 Da        Isoelectric Point: 4.4916

>NTDB_id=831429 HX0037_RS14785 WP_014418670.1 3009019..3009723(+) (pptA) [Bacillus amyloliquefaciens strain HX0037]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEIAGLIGANGAGKSTVIKAVLGLSRDIEGGIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIEGEECRERAGRLLEEFSLTSVKHDLPSGFSKGMQQKLMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=831429 HX0037_RS14785 WP_014418670.1 3009019..3009723(+) (pptA) [Bacillus amyloliquefaciens strain HX0037]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCTGATGTATCTCTGTC
AGTCAACGCTGGTGAAATTGCCGGTTTAATCGGAGCGAACGGCGCGGGGAAAAGTACAGTGATAAAGGCGGTTCTCGGGC
TGTCCCGGGATATTGAAGGCGGTATTGAGTGGAATGATTCGTCTTATGCTTACATACCGGAGCGTCCGAGTTTTTACGAT
GAACTGACACTTTGGGAGCACCTCGAGCTGACCGGGTCATTGCGGGGTATAGAAGGGGAAGAGTGCCGTGAGCGGGCAGG
GCGGCTGCTTGAAGAGTTTTCGCTGACGTCTGTAAAACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAGC
TGATGCTTATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACAAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGGATTTTGATGTGCACGCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGATTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACATTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45

100

0.462
  pptA Streptococcus thermophilus LMD-9

44.167

100

0.453