Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   HX0037_RS14675 Genome accession   NZ_CP139782
Coordinates   2984879..2985574 (+) Length   231 a.a.
NCBI ID   WP_014305616.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2979879..2990574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS14655 - 2980798..2981784 (+) 987 WP_094247634.1 ABC transporter permease -
  HX0037_RS14660 - 2981821..2982804 (+) 984 WP_094247635.1 ABC transporter permease -
  HX0037_RS14665 - 2982820..2983515 (+) 696 WP_003152281.1 ABC transporter ATP-binding protein -
  HX0037_RS14670 - 2983505..2984815 (+) 1311 WP_003152283.1 ABC transporter permease -
  HX0037_RS14675 braR 2984879..2985574 (+) 696 WP_014305616.1 response regulator transcription factor Regulator
  HX0037_RS14680 - 2985567..2986571 (+) 1005 WP_094247636.1 sensor histidine kinase -
  HX0037_RS14685 - 2986674..2987429 (+) 756 WP_003152289.1 ABC transporter ATP-binding protein -
  HX0037_RS14690 - 2987426..2989366 (+) 1941 WP_003152291.1 FtsX-like permease family protein -
  HX0037_RS14695 - 2989473..2990183 (+) 711 WP_015387829.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26853.11 Da        Isoelectric Point: 7.1196

>NTDB_id=831428 HX0037_RS14675 WP_014305616.1 2984879..2985574(+) (braR) [Bacillus amyloliquefaciens strain HX0037]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFTEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=831428 HX0037_RS14675 WP_014305616.1 2984879..2985574(+) (braR) [Bacillus amyloliquefaciens strain HX0037]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCACGAGATGAAGGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGAATAAAGGATTTCAGCCGGGTCATCCGGGAGTTTACTGAAATTAAGCCTGATTTGGTGATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTCTTTTTGTCCTCG
CGCGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGAGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCACCAATACGGCACAGAACCGGCGCTGATGAAAAGATGGTGCG
GGGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAACTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAGCAGAAAAATAAAATCGTCAGCCGGGAAGAACTCATCAGAAGCCTATGGAATGATGAGCGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGATCAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGACAGGGATACATCGCAAAGGAAGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385