Detailed information NTG0831427

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: HX0037_RS14250
• Genome accession: NZ_CP139782
• Coordinates: 2922867..2923997 (+)
• Length: 376 a.a.
• NCBI ID: WP_070082263.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain HX0037
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2917867..2928997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HX0037_RS14220	-	2917877..2918401 (+)	525	WP_025650346.1	type 1 glutamine amidotransferase domain-containing protein	-
HX0037_RS14225	-	2918433..2919419 (-)	987	WP_065180460.1	Gfo/Idh/MocA family protein	-
HX0037_RS14230	-	2919599..2920759 (+)	1161	WP_014305691.1	AI-2E family transporter	-
HX0037_RS14235	-	2920851..2921681 (+)	831	WP_007613337.1	undecaprenyl-diphosphate phosphatase	-
HX0037_RS14245	-	2922344..2922547 (-)	204	WP_070082264.1	hypothetical protein	-
HX0037_RS14250	rapC	2922867..2923997 (+)	1131	WP_070082263.1	Rap family tetratricopeptide repeat protein	Regulator
HX0037_RS14255	-	2924132..2924254 (+)	123	WP_255219923.1	hypothetical protein	-
HX0037_RS14260	-	2925141..2925461 (+)	321	WP_094247621.1	hypothetical protein	-
HX0037_RS14265	-	2925529..2926170 (-)	642	WP_094247622.1	cupin domain-containing protein	-
HX0037_RS14270	hmpA	2926387..2927562 (+)	1176	WP_094247926.1	NO-inducible flavohemoprotein	-
HX0037_RS14275	-	2927705..2928550 (+)	846	WP_070082259.1	glucosaminidase domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44368.74 Da
• Isoelectric Point: 6.3556

>NTDB_id=831427 HX0037_RS14250 WP_070082263.1 2922867..2923997(+) (rapC) [Bacillus amyloliquefaciens strain HX0037]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRFEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSNAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=831427 HX0037_RS14250 WP_070082263.1 2922867..2923997(+) (rapC) [Bacillus amyloliquefaciens strain HX0037]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTCATGTTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCTATCGGCTTTTATAGAGAAGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCTATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTCGTCATCTCTGG
GAATTATGTTGACTTTAAACGCTTTGAAAAAAGTTTGCCTCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACCTAGAAGAATACAGTAATGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAATC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (193-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.591	100	0.449
rapF	Bacillus subtilis subsp. subtilis str. 168	40.106	100	0.404