Detailed information NTG0831406

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: HX0037_RS11350
• Genome accession: NZ_CP139782
• Coordinates: 2356652..2357782 (+)
• Length: 376 a.a.
• NCBI ID: WP_017418744.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain HX0037
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2351652..2362782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HX0037_RS11325	-	2352608..2353294 (+)	687	WP_003151188.1	VWA domain-containing protein	-
HX0037_RS11330	-	2353604..2354284 (+)	681	WP_165625824.1	VWA domain-containing protein	-
HX0037_RS11335	-	2354371..2354535 (+)	165	WP_003151191.1	hypothetical protein	-
HX0037_RS11340	fdhD	2354630..2355418 (+)	789	WP_014306001.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
HX0037_RS11345	moaA	2355436..2356461 (+)	1026	WP_094247428.1	GTP 3',8-cyclase MoaA	-
HX0037_RS11350	rapC	2356652..2357782 (+)	1131	WP_017418744.1	tetratricopeptide repeat protein	Regulator
HX0037_RS11355	-	2357904..2358383 (+)	480	WP_007407583.1	hypothetical protein	-
HX0037_RS11360	-	2358458..2358646 (+)	189	WP_015418407.1	CsbD family protein	-
HX0037_RS11365	ureA	2359000..2359317 (+)	318	WP_003151198.1	urease subunit gamma	-
HX0037_RS11370	ureB	2359314..2359688 (+)	375	WP_003151199.1	urease subunit beta	-
HX0037_RS11375	ureC	2359685..2361394 (+)	1710	WP_191073232.1	urease subunit alpha	-
HX0037_RS11380	-	2361535..2361939 (+)	405	WP_191073231.1	Rrf2 family transcriptional regulator	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44861.96 Da
• Isoelectric Point: 5.4375

>NTDB_id=831406 HX0037_RS11350 WP_017418744.1 2356652..2357782(+) (rapC) [Bacillus amyloliquefaciens strain HX0037]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAIYTSGHGQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=831406 HX0037_RS11350 WP_017418744.1 2356652..2357782(+) (rapC) [Bacillus amyloliquefaciens strain HX0037]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGTATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGAAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTACGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCATTTACACAAGCGGACA
TGGGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (192-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Anaphase-promoting complex subunit 5 (ANAPC5) (314-373)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.842	100	0.423
rapF	Bacillus subtilis subsp. subtilis str. 168	40	99.734	0.399