Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   HX0037_RS09965 Genome accession   NZ_CP139782
Coordinates   2085963..2086652 (+) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2080963..2091652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS09945 - 2082127..2083161 (+) 1035 WP_094247356.1 Gfo/Idh/MocA family protein -
  HX0037_RS09950 - 2083181..2084050 (+) 870 WP_094247357.1 sugar phosphate isomerase/epimerase family protein -
  HX0037_RS09955 iolI 2084138..2084980 (+) 843 WP_007614866.1 2-keto-myo-inositol isomerase -
  HX0037_RS09960 iolJ 2084983..2085855 (+) 873 WP_094247358.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  HX0037_RS09965 braR 2085963..2086652 (+) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  HX0037_RS09970 yxdK 2086649..2087626 (+) 978 WP_094247359.1 two-component system sensor histidine kinase YxdK -
  HX0037_RS09975 yxdL 2087771..2088544 (+) 774 WP_094247360.1 ABC transporter ATP-binding protein YxdL -
  HX0037_RS09980 yxdM 2088519..2090387 (+) 1869 WP_063174428.1 ABC transporter permease YxdM -
  HX0037_RS09985 - 2090401..2090748 (+) 348 WP_004393256.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=831402 HX0037_RS09965 WP_004393241.1 2085963..2086652(+) (braR) [Bacillus amyloliquefaciens strain HX0037]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=831402 HX0037_RS09965 WP_004393241.1 2085963..2086652(+) (braR) [Bacillus amyloliquefaciens strain HX0037]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCTGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTACGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTATGCCGCCAAGCAGGGTGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCACCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGAGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393