Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   HX0037_RS08955 Genome accession   NZ_CP139782
Coordinates   1885968..1886198 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1880968..1891198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS08945 spoVT 1881692..1882228 (-) 537 WP_015416660.1 stage V sporulation protein T -
  HX0037_RS08950 mfd 1882365..1885898 (-) 3534 WP_017419493.1 transcription-repair coupling factor -
  HX0037_RS08955 subA/fin 1885968..1886198 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  HX0037_RS08960 pth 1886260..1886826 (-) 567 WP_025650338.1 aminoacyl-tRNA hydrolase -
  HX0037_RS08965 - 1886911..1887519 (-) 609 WP_014416724.1 50S ribosomal protein L25/general stress protein Ctc -
  HX0037_RS08970 - 1887604..1888557 (-) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  HX0037_RS08975 glmU 1888579..1889949 (-) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  HX0037_RS08980 spoVG 1890141..1890434 (-) 294 WP_004264660.1 septation regulator SpoVG -
  HX0037_RS08985 ridA 1890630..1891010 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=831391 HX0037_RS08955 WP_004264650.1 1885968..1886198(-) (subA/fin) [Bacillus amyloliquefaciens strain HX0037]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=831391 HX0037_RS08955 WP_004264650.1 1885968..1886198(-) (subA/fin) [Bacillus amyloliquefaciens strain HX0037]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868