Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   HX0037_RS07775 Genome accession   NZ_CP139782
Coordinates   1673058..1674179 (-) Length   373 a.a.
NCBI ID   WP_003156660.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668058..1679179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS07755 - 1668513..1669208 (-) 696 WP_003156655.1 metal ABC transporter ATP-binding protein -
  HX0037_RS07760 - 1669263..1670213 (-) 951 WP_094247903.1 metal ABC transporter substrate-binding protein -
  HX0037_RS07765 - 1670400..1672079 (-) 1680 WP_094247266.1 glycoside hydrolase family 13 protein -
  HX0037_RS07770 - 1672163..1672942 (-) 780 WP_094247267.1 glucose 1-dehydrogenase -
  HX0037_RS07775 rapF 1673058..1674179 (-) 1122 WP_003156660.1 tetratricopeptide repeat protein Regulator
  HX0037_RS07780 - 1674289..1674792 (+) 504 WP_077721755.1 M15 family metallopeptidase -
  HX0037_RS07785 - 1674789..1676147 (-) 1359 WP_077721754.1 YcdB/YcdC domain-containing protein -
  HX0037_RS07790 - 1676348..1677748 (-) 1401 WP_077721753.1 YcdB/YcdC domain-containing protein -
  HX0037_RS07795 - 1677877..1678872 (+) 996 WP_191073262.1 DUF5105 domain-containing protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 44333.58 Da        Isoelectric Point: 5.1691

>NTDB_id=831385 HX0037_RS07775 WP_003156660.1 1673058..1674179(-) (rapF) [Bacillus amyloliquefaciens strain HX0037]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=831385 HX0037_RS07775 WP_003156660.1 1673058..1674179(-) (rapF) [Bacillus amyloliquefaciens strain HX0037]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTTAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGCGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACACA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAGGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(187-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

42.588

99.464

0.424
  rapC Bacillus subtilis subsp. subtilis str. 168

40.323

99.732

0.402