Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   HX0037_RS07080 Genome accession   NZ_CP139782
Coordinates   1516319..1516753 (-) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1511319..1521753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS07065 - 1511922..1512770 (-) 849 WP_191073267.1 diguanylate cyclase domain-containing protein -
  HX0037_RS07070 - 1512751..1513836 (-) 1086 WP_172614458.1 lipoprotein YdaJ -
  HX0037_RS07075 - 1514069..1516255 (-) 2187 WP_106080143.1 DNA topoisomerase III -
  HX0037_RS07080 lrpC 1516319..1516753 (-) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  HX0037_RS07085 - 1516930..1517220 (+) 291 WP_003156265.1 DUF3817 domain-containing protein -
  HX0037_RS07090 - 1517258..1518067 (-) 810 WP_014304362.1 lipid II flippase Amj family protein -
  HX0037_RS07095 - 1518566..1518988 (-) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  HX0037_RS07100 - 1518995..1519618 (-) 624 WP_014304361.1 GNAT family N-acetyltransferase -
  HX0037_RS07105 - 1519705..1520208 (-) 504 WP_014304360.1 D-lyxose/D-mannose family sugar isomerase -
  HX0037_RS07110 - 1520221..1521081 (-) 861 WP_094247229.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=831374 HX0037_RS07080 WP_003156263.1 1516319..1516753(-) (lrpC) [Bacillus amyloliquefaciens strain HX0037]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=831374 HX0037_RS07080 WP_003156263.1 1516319..1516753(-) (lrpC) [Bacillus amyloliquefaciens strain HX0037]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTCCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCTAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGTCTGGAAACCATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799