Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   HX0037_RS05415 Genome accession   NZ_CP139782
Coordinates   1192507..1193223 (-) Length   238 a.a.
NCBI ID   WP_146283724.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187507..1198223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS05400 - 1189775..1190914 (+) 1140 WP_096034920.1 YibE/F family protein -
  HX0037_RS05405 - 1190911..1191672 (+) 762 WP_094247161.1 YibE/F family protein -
  HX0037_RS05410 - 1191708..1192373 (-) 666 WP_146283723.1 NAD(P)H-dependent oxidoreductase -
  HX0037_RS05415 treR 1192507..1193223 (-) 717 WP_146283724.1 trehalose operon repressor Regulator
  HX0037_RS05420 treC 1193247..1194932 (-) 1686 WP_191073296.1 alpha,alpha-phosphotrehalase -
  HX0037_RS05425 treP 1195008..1196423 (-) 1416 WP_191073295.1 PTS system trehalose-specific EIIBC component -
  HX0037_RS05430 - 1196694..1196954 (+) 261 WP_007408496.1 spore germination protein -
  HX0037_RS05435 - 1196969..1197211 (+) 243 WP_003155595.1 spore germination protein -
  HX0037_RS05440 - 1197227..1197658 (+) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  HX0037_RS05445 - 1197668..1198045 (-) 378 WP_007610033.1 DUF1992 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27584.57 Da        Isoelectric Point: 6.6557

>NTDB_id=831370 HX0037_RS05415 WP_146283724.1 1192507..1193223(-) (treR) [Bacillus amyloliquefaciens strain HX0037]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGEFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=831370 HX0037_RS05415 WP_146283724.1 1192507..1193223(-) (treR) [Bacillus amyloliquefaciens strain HX0037]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTAACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGAGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTTTTTTTGGAGGATACCA
GCCTCTTCCAATATACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424