Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   HX0037_RS04235 Genome accession   NZ_CP139782
Coordinates   975054..975797 (-) Length   247 a.a.
NCBI ID   WP_003155231.1    Uniprot ID   A7Z316
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 970054..980797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS04215 - 970426..971811 (+) 1386 WP_191073300.1 hypothetical protein -
  HX0037_RS04220 - 971880..973067 (+) 1188 WP_167860027.1 M20 family metallopeptidase -
  HX0037_RS04225 - 973088..973792 (-) 705 WP_025649550.1 EcsC family protein -
  HX0037_RS04230 - 973835..975061 (-) 1227 WP_007409219.1 ABC transporter permease -
  HX0037_RS04235 pptA 975054..975797 (-) 744 WP_003155231.1 ABC transporter ATP-binding protein EcsA Regulator
  HX0037_RS04240 - 976288..976725 (+) 438 WP_057080120.1 HIT family protein -
  HX0037_RS04245 serC 976862..977941 (+) 1080 WP_060386843.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  HX0037_RS04250 - 978062..978580 (+) 519 WP_003155234.1 tryptophan transporter -
  HX0037_RS04255 - 978638..978829 (-) 192 WP_007409223.1 hypothetical protein -
  HX0037_RS04260 - 978947..979303 (+) 357 WP_007409224.1 YtxH domain-containing protein -
  HX0037_RS04265 - 979483..980094 (+) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -
  HX0037_RS04270 - 980091..980432 (-) 342 WP_094247098.1 DUF1878 family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27724.14 Da        Isoelectric Point: 5.9140

>NTDB_id=831362 HX0037_RS04235 WP_003155231.1 975054..975797(-) (pptA) [Bacillus amyloliquefaciens strain HX0037]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFSEDKESYRSQFTY
IPETPVLYEELTLKEHLELTAMAYGLSKETLEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPSLYIIDE
PFLGLDPLAINALLERMDAAKKAGSSVLMSTHILATAERYCDAFIILHNGEVRASGTLEELREQFGMKDAALDDLYIELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=831362 HX0037_RS04235 WP_003155231.1 975054..975797(-) (pptA) [Bacillus amyloliquefaciens strain HX0037]
ATGTCTCTGCTATCGGTAAAAGACTTAACCGGCGGTTATACGAGAAACCCGGTCTTAAAAAATGTTTCATTCACCCTTGA
GCCGAACCAGATTGTCGGACTCATCGGATTAAACGGCGCGGGCAAAAGCACGACGATCCGGCATATTATCGGATTAATGG
ACCCGCATAAAGGCTCGATCGAGCTGAACGGCAAGACGTTTTCGGAGGATAAGGAAAGCTACCGCTCGCAATTTACGTAC
ATCCCCGAAACGCCGGTGCTGTATGAAGAACTGACGCTCAAAGAGCATCTGGAGCTGACGGCCATGGCGTACGGCCTTTC
CAAAGAAACGCTTGAAAAAAGGCTTCCTCCGCTTCTGAAAGAATTCAGAATGGAAAAAAGGCTGAAATGGTTTCCCGCTC
ACTTTTCCAAAGGGATGAAGCAGAAGGTCATGATCATGTGCGCGTTTCTCGCGGAGCCTTCGCTTTATATCATTGACGAG
CCGTTTCTCGGCCTTGACCCGCTGGCGATCAATGCATTGCTGGAGCGGATGGACGCCGCGAAAAAAGCCGGATCAAGCGT
GCTGATGTCAACCCATATCCTGGCTACGGCAGAGCGCTACTGTGATGCTTTCATTATTTTACATAACGGCGAAGTGCGGG
CAAGCGGCACACTGGAAGAACTGAGAGAGCAGTTCGGCATGAAAGACGCAGCTCTTGATGACTTGTATATTGAACTGACG
AAGGAAGACGCCGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z316

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

96.761

0.555
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547