Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KI236_RS03975 Genome accession   NZ_AP023415
Coordinates   824064..825824 (-) Length   586 a.a.
NCBI ID   WP_212819529.1    Uniprot ID   -
Organism   Vescimonas fastidiosa strain MM35     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 819064..830824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI236_RS03950 (MM35RIKEN_08010) - 819171..820304 (-) 1134 WP_212819523.1 AI-2E family transporter -
  KI236_RS03955 (MM35RIKEN_08020) - 820307..821011 (-) 705 WP_022177410.1 phosphatase PAP2 family protein -
  KI236_RS03960 - 821057..821572 (-) 516 WP_212819525.1 glycosyl-4,4'-diaponeurosporenoate acyltransferase -
  KI236_RS03965 (MM35RIKEN_08040) - 821621..822223 (-) 603 WP_212819527.1 AAA family ATPase -
  KI236_RS03970 (MM35RIKEN_08050) rcrQ 822243..824048 (-) 1806 WP_022177408.1 ABC transporter ATP-binding protein Regulator
  KI236_RS03975 (MM35RIKEN_08060) rcrP 824064..825824 (-) 1761 WP_212819529.1 ABC transporter ATP-binding protein Regulator
  KI236_RS03980 (MM35RIKEN_08070) - 825864..826535 (-) 672 WP_022177406.1 hypothetical protein -
  KI236_RS03985 (MM35RIKEN_08080) - 826551..827102 (-) 552 WP_212819531.1 HdeD family acid-resistance protein -
  KI236_RS03990 (MM35RIKEN_08090) ftsH 827099..828928 (-) 1830 WP_212819533.1 ATP-dependent zinc metalloprotease FtsH -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64132.68 Da        Isoelectric Point: 5.8803

>NTDB_id=83136 KI236_RS03975 WP_212819529.1 824064..825824(-) (rcrP) [Vescimonas fastidiosa strain MM35]
MFELLKKMKRKEWLTAGLCAILVLGQIYFDLRLPDYMSDLTVLIKTPGSAMSDIWQTGLEMLGCTLASALLAVICGYLAA
QTAAGFSYTIREKVFNQVADFGQYEMQQFSVPSLINRTTNDITQIQMLVAMGLQIMIKSPIMAIWAVIKIINKSWTLSVI
TAGFVVALLAMMAIVIAVIVPRVRRVQKLTDNINRVSRENLTGINVVHAYNAEKYQAEKFEQANDELMRTQLFNQHGFAM
LMPAVSFAMNTLALTVYWVGASIVEKVALTDVAARIATFGDIMVFGTYATYVIMSIMMMVMIVMFFPSAQVSAGRINEVL
NAKITLREGKSDNAPEVGTVEFKDVSFHYPTSDKDVLENISFKVNKGETIAFIGATGSGKTTLISLAARFYDTTSGTVLI
DGKDIKEYTFDALYDRIGYVTQKAVLFAGDIRDNVLFGESAAVPTDENAQKALELAQASEFVEKLPGKLDAPISQGGSNV
SGGQKQRLAIARALARNPEILIFDDSFSALDYKTDAALRKGLAEKLGGVTCMIVAQRIGTIRNADKIVVLDEGKAVGIGT
HEELIKNCAVYREIAMSQLSAEELGA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=83136 KI236_RS03975 WP_212819529.1 824064..825824(-) (rcrP) [Vescimonas fastidiosa strain MM35]
ATGTTTGAGCTATTAAAGAAAATGAAACGCAAGGAGTGGCTGACTGCCGGGCTTTGCGCCATTCTGGTATTGGGTCAGAT
CTATTTTGATCTGCGCCTGCCGGACTATATGAGCGACCTGACAGTACTTATCAAGACCCCTGGCAGCGCAATGAGTGACA
TCTGGCAAACAGGGCTTGAAATGCTCGGCTGCACGCTCGCAAGCGCTCTGCTTGCGGTAATTTGCGGATACTTGGCAGCG
CAGACTGCCGCAGGCTTCAGCTATACAATCCGTGAAAAGGTGTTTAATCAGGTGGCGGATTTCGGTCAGTATGAAATGCA
GCAGTTTTCTGTTCCGAGCCTGATCAACCGCACGACGAATGACATCACGCAGATCCAGATGCTTGTGGCAATGGGCCTGC
AAATTATGATCAAATCTCCGATCATGGCGATTTGGGCGGTCATAAAGATCATCAACAAAAGCTGGACGCTGTCTGTTATC
ACCGCCGGCTTTGTCGTGGCGCTGCTTGCCATGATGGCAATCGTCATTGCGGTGATCGTGCCGCGTGTCCGCCGTGTGCA
GAAATTGACGGATAACATCAACCGTGTATCCCGTGAAAATCTGACGGGCATCAATGTGGTGCACGCTTATAATGCCGAGA
AATATCAAGCGGAAAAATTTGAGCAGGCCAACGACGAATTGATGAGAACGCAGCTGTTCAATCAGCACGGATTTGCGATG
CTTATGCCGGCTGTCTCGTTCGCTATGAATACTTTGGCATTGACCGTCTATTGGGTAGGCGCATCTATCGTGGAAAAGGT
CGCACTTACAGATGTCGCAGCGAGGATCGCAACATTCGGTGACATTATGGTATTCGGCACCTATGCAACCTATGTCATCA
TGTCCATTATGATGATGGTCATGATTGTAATGTTCTTCCCTTCGGCCCAGGTTTCTGCCGGGCGTATCAATGAGGTGCTG
AATGCAAAAATCACCTTACGGGAAGGAAAATCGGACAACGCTCCCGAAGTGGGCACAGTCGAGTTCAAGGATGTTTCCTT
CCACTATCCCACCTCGGATAAGGATGTATTGGAAAACATCAGCTTTAAGGTGAATAAAGGTGAAACCATTGCATTTATCG
GTGCGACCGGCAGCGGTAAAACAACGCTCATCAGCCTGGCAGCTCGCTTTTACGACACGACCTCCGGCACGGTCCTGATC
GACGGAAAGGATATAAAAGAATACACCTTCGACGCCCTTTACGACCGTATCGGATATGTAACGCAGAAAGCGGTTCTGTT
TGCCGGTGACATCCGGGATAATGTGCTGTTCGGTGAAAGCGCCGCAGTTCCTACCGACGAAAACGCACAGAAAGCCTTGG
AACTTGCCCAGGCAAGTGAATTTGTCGAAAAACTGCCCGGCAAATTAGATGCACCGATTTCACAGGGCGGATCCAATGTT
TCCGGCGGACAGAAGCAGCGTTTGGCAATCGCCCGTGCGTTGGCGAGAAATCCCGAGATTTTGATTTTCGATGACTCCTT
CTCCGCATTGGACTACAAAACCGATGCAGCGCTGCGAAAAGGTCTTGCCGAAAAGCTCGGCGGCGTTACCTGCATGATCG
TTGCCCAGAGAATCGGTACGATCCGCAACGCCGATAAGATCGTCGTTCTGGATGAAGGCAAGGCCGTTGGGATCGGTACG
CATGAGGAACTGATAAAGAATTGTGCTGTCTATCGAGAAATTGCCATGTCGCAGTTGTCCGCCGAAGAACTGGGCGCATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(54-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.247

100

0.493

Multiple sequence alignment