Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KI236_RS03970 Genome accession   NZ_AP023415
Coordinates   822243..824048 (-) Length   601 a.a.
NCBI ID   WP_022177408.1    Uniprot ID   -
Organism   Vescimonas fastidiosa strain MM35     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 810828..822223 822243..824048 flank 20


Gene organization within MGE regions


Location: 810828..824048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI236_RS03900 (MM35RIKEN_07910) - 810828..811010 (-) 183 WP_022177421.1 helix-turn-helix domain-containing protein -
  KI236_RS03905 (MM35RIKEN_07920) - 811007..811399 (-) 393 WP_022177420.1 RNA polymerase sigma factor -
  KI236_RS03910 (MM35RIKEN_07930) - 811852..812181 (+) 330 WP_022177419.1 helix-turn-helix domain-containing protein -
  KI236_RS03915 (MM35RIKEN_07940) - 812335..813042 (-) 708 WP_022177418.1 response regulator transcription factor -
  KI236_RS03920 (MM35RIKEN_07950) - 813069..813806 (-) 738 WP_212819517.1 zinc metallopeptidase -
  KI236_RS03925 (MM35RIKEN_07960) - 813829..814518 (-) 690 WP_212819518.1 hypothetical protein -
  KI236_RS03930 (MM35RIKEN_07970) - 814520..816043 (-) 1524 WP_022177415.1 DUF1538 domain-containing protein -
  KI236_RS03935 (MM35RIKEN_07980) - 816070..816543 (-) 474 WP_022177414.1 DUF308 domain-containing protein -
  KI236_RS03940 (MM35RIKEN_07990) - 816540..817529 (-) 990 WP_212819521.1 alpha/beta hydrolase -
  KI236_RS03945 (MM35RIKEN_08000) - 817605..818987 (-) 1383 WP_022177412.1 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein -
  KI236_RS03950 (MM35RIKEN_08010) - 819171..820304 (-) 1134 WP_212819523.1 AI-2E family transporter -
  KI236_RS03955 (MM35RIKEN_08020) - 820307..821011 (-) 705 WP_022177410.1 phosphatase PAP2 family protein -
  KI236_RS03960 - 821057..821572 (-) 516 WP_212819525.1 glycosyl-4,4'-diaponeurosporenoate acyltransferase -
  KI236_RS03965 (MM35RIKEN_08040) - 821621..822223 (-) 603 WP_212819527.1 AAA family ATPase -
  KI236_RS03970 (MM35RIKEN_08050) rcrQ 822243..824048 (-) 1806 WP_022177408.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 66331.11 Da        Isoelectric Point: 6.5078

>NTDB_id=83135 KI236_RS03970 WP_022177408.1 822243..824048(-) (rcrQ) [Vescimonas fastidiosa strain MM35]
MNGNQMMGRRTGVPEKSKRGIKGVLKELFTYSSKLRLPMIIAFVFSMIGAVLTIIGPNQLSRITDLISDGLMTGIDLSAV
AKVGGVLLAIYLIGEVCGYIEQYIMATVTLDLSKKMRRDLSDKINKVPMKCFGKISHGDILSRVTNDVSTLQQALSNSLP
SMISAVAQFVGCLIMMLVTEWRMALAAIAITLIGFVVMAVIMSRSQKYFVARQQSLGKLNGYVEEMYSGHDVVRISRANN
EIKKNFAGMNRAVYDANRKSQFLSGVMQPLMNVIGNLGYVAVCVIGAALVMDGQITFGVITAFIMFVRLFTSPLSTLAQG
MTQMQTAAAAGDRIFDFLQEEELSDESYKTEKLTEVHGEVEFDHVRFSYPDNPDKIIIKDFSAHIKPGQKVAIVGPTGAG
KTTMVNLLMRFFDLVGGDIRIDGISTSDLTRENIHELFGMVLQDTWLFDGTVRENLVYNKTGVTDEELEKACRACGIYHF
IETLPNGFDTVLGENVVISAGQKQLFTIARAMIKNSPMMILDEATSSVDTRTELMTQKAMDTLTEHRTSFVIAHRLSTIK
NADLILVMKEGDIIEQGTHEELLAQGGFYADLYNSQFDKAS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=83135 KI236_RS03970 WP_022177408.1 822243..824048(-) (rcrQ) [Vescimonas fastidiosa strain MM35]
ATGAACGGAAATCAAATGATGGGGCGCCGAACAGGCGTGCCCGAAAAAAGTAAACGAGGAATAAAGGGCGTTCTGAAAGA
ACTGTTTACCTATTCTTCAAAATTGCGGCTGCCAATGATCATTGCGTTTGTGTTTTCCATGATCGGCGCTGTCTTGACGA
TCATCGGGCCAAACCAGCTTAGTCGTATCACGGATCTGATCTCAGACGGACTGATGACCGGCATTGACCTTTCTGCCGTT
GCAAAGGTGGGAGGCGTCCTGCTGGCGATCTATCTGATCGGTGAAGTGTGCGGATATATTGAGCAATATATCATGGCTAC
CGTTACGCTGGATCTGTCCAAGAAAATGCGGCGGGATCTTTCCGATAAAATCAATAAGGTCCCTATGAAGTGCTTTGGGA
AAATCTCGCACGGCGATATTCTGAGCCGTGTGACAAATGATGTCAGCACGCTTCAGCAGGCACTTTCCAACAGCCTTCCG
TCGATGATCAGTGCAGTTGCCCAATTCGTAGGCTGCCTGATTATGATGCTTGTGACGGAGTGGCGAATGGCGCTTGCAGC
GATCGCCATTACGCTGATTGGATTCGTTGTAATGGCGGTAATCATGTCCCGTTCTCAAAAATACTTCGTCGCCCGTCAGC
AGAGTCTCGGTAAGCTCAACGGCTATGTGGAGGAAATGTACTCCGGCCATGATGTTGTACGCATTTCCCGTGCCAACAAC
GAGATCAAAAAGAACTTTGCCGGGATGAACCGTGCGGTTTACGATGCAAACCGGAAAAGTCAGTTTCTATCCGGCGTTAT
GCAGCCGCTGATGAATGTGATCGGCAATCTCGGTTATGTAGCGGTCTGTGTGATCGGTGCGGCTTTGGTTATGGATGGGC
AGATCACCTTTGGCGTAATCACGGCATTTATCATGTTTGTCCGCTTGTTTACCTCCCCGCTCAGCACACTGGCACAGGGT
ATGACGCAGATGCAGACGGCAGCTGCCGCCGGAGATCGGATATTCGACTTCCTGCAGGAGGAAGAACTTTCGGATGAAAG
CTATAAGACCGAGAAATTGACCGAGGTGCATGGCGAGGTCGAATTCGACCATGTTCGCTTCAGCTATCCGGATAATCCGG
ACAAAATCATTATCAAAGATTTTTCTGCTCACATCAAGCCGGGGCAGAAAGTCGCTATCGTCGGTCCTACAGGTGCCGGT
AAGACAACAATGGTCAACCTTTTGATGCGGTTCTTTGATCTGGTCGGCGGCGATATCCGCATTGACGGTATTTCTACCTC
CGATTTGACACGAGAAAACATCCACGAGCTGTTTGGCATGGTGCTGCAGGACACCTGGCTGTTTGACGGAACCGTGCGTG
AAAATCTCGTTTACAACAAAACAGGGGTTACGGACGAAGAACTTGAAAAGGCCTGCCGTGCGTGTGGGATCTATCACTTT
ATCGAGACGCTTCCGAATGGCTTTGATACCGTGCTTGGAGAAAATGTGGTCATTTCCGCAGGGCAAAAGCAGCTCTTTAC
CATTGCTCGTGCCATGATCAAAAACAGCCCAATGATGATCCTGGACGAAGCGACCAGCTCGGTCGATACACGGACGGAGC
TGATGACGCAGAAGGCTATGGATACGCTGACAGAGCACAGAACCAGCTTCGTGATCGCTCATCGGCTTTCTACCATTAAA
AACGCTGACCTGATCCTTGTGATGAAGGAAGGCGACATCATCGAACAGGGCACGCATGAGGAACTGCTGGCACAGGGCGG
TTTCTATGCTGACCTATACAACAGCCAGTTTGACAAAGCATCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(379-526)

ABC transporter transmembrane region (ABC_membrane)

(39-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.562

95.84

0.494

Multiple sequence alignment