Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   HX0037_RS01755 Genome accession   NZ_CP139782
Coordinates   464039..464488 (-) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 459039..469488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS01720 sepM 459135..460157 (-) 1023 WP_094246960.1 SepM family pheromone-processing serine protease Regulator
  HX0037_RS01725 - 460163..460942 (-) 780 WP_014304961.1 patatin family protein -
  HX0037_RS01730 ylbJ 461122..462348 (+) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  HX0037_RS01735 coaD 462367..462849 (-) 483 WP_003154467.1 pantetheine-phosphate adenylyltransferase -
  HX0037_RS01740 rsmD 462854..463408 (-) 555 WP_077722171.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HX0037_RS01745 - 463408..463617 (-) 210 WP_094246961.1 hypothetical protein -
  HX0037_RS01750 - 463708..463980 (-) 273 WP_003154470.1 YlbG family protein -
  HX0037_RS01755 ylbF 464039..464488 (-) 450 WP_003154472.1 YlbF family regulator Regulator
  HX0037_RS01760 - 464559..464798 (-) 240 WP_003154475.1 YlbE-like family protein -
  HX0037_RS01765 - 464814..465224 (-) 411 WP_070081781.1 YlbD family protein -
  HX0037_RS01770 - 465388..466428 (-) 1041 WP_003154477.1 CAP domain-containing protein -
  HX0037_RS01775 - 466513..466956 (-) 444 WP_003154478.1 CBS domain-containing protein -
  HX0037_RS01780 - 467097..467456 (+) 360 WP_007409688.1 YugN family protein -
  HX0037_RS01785 ctaG 467490..468374 (-) 885 WP_003154480.1 cytochrome c oxidase assembly factor CtaG -
  HX0037_RS01790 ctaF 468399..468731 (-) 333 WP_015388278.1 cytochrome c oxidase subunit IVB -
  HX0037_RS01795 ctaE 468734..469357 (-) 624 WP_003154482.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=831338 HX0037_RS01755 WP_003154472.1 464039..464488(-) (ylbF) [Bacillus amyloliquefaciens strain HX0037]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=831338 HX0037_RS01755 WP_003154472.1 464039..464488(-) (ylbF) [Bacillus amyloliquefaciens strain HX0037]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGTTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879