Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HX0037_RS01085 Genome accession   NZ_CP139782
Coordinates   328598..328960 (-) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323598..333960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS01060 flhB 325123..326202 (-) 1080 WP_013352272.1 flagellar biosynthesis protein FlhB -
  HX0037_RS01065 fliR 326202..326981 (-) 780 WP_013352271.1 flagellar biosynthetic protein FliR -
  HX0037_RS01070 fliQ 326988..327257 (-) 270 WP_013352270.1 flagellar biosynthesis protein FliQ -
  HX0037_RS01075 fliP 327272..327937 (-) 666 WP_013352269.1 flagellar type III secretion system pore protein FliP -
  HX0037_RS01080 fliZ 327930..328583 (-) 654 WP_013352268.1 flagella biosynthesis regulatory protein FliZ -
  HX0037_RS01085 pilH 328598..328960 (-) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  HX0037_RS01090 fliY 328987..330120 (-) 1134 WP_013352267.1 flagellar motor switch phosphatase FliY -
  HX0037_RS01095 fliM 330110..331108 (-) 999 WP_013352266.1 flagellar motor switch protein FliM -
  HX0037_RS01100 fliL 331142..331561 (-) 420 WP_014305005.1 flagellar basal body-associated protein FliL -
  HX0037_RS01105 - 331558..331773 (-) 216 WP_003154243.1 flagellar FlbD family protein -
  HX0037_RS01110 flgG 331813..332589 (-) 777 WP_003154244.1 flagellar basal body rod protein FlgG -
  HX0037_RS01115 flgD 332614..333054 (-) 441 WP_003154247.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=831329 HX0037_RS01085 WP_003154238.1 328598..328960(-) (pilH) [Bacillus amyloliquefaciens strain HX0037]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=831329 HX0037_RS01085 WP_003154238.1 328598..328960(-) (pilH) [Bacillus amyloliquefaciens strain HX0037]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCGGACGGAGCACAGGCAGTCGAAAAATTCAAAGAGCATTCACCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACCGCATTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGGCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAGCCATTCCA
AGCAGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383