Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   HX0037_RS00740 Genome accession   NZ_CP139782
Coordinates   254544..254975 (-) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 249544..259975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS00730 hexA 251041..253626 (-) 2586 WP_094246926.1 DNA mismatch repair protein MutS Machinery gene
  HX0037_RS00735 cotE 253745..254290 (-) 546 WP_003154111.1 outer spore coat protein CotE -
  HX0037_RS00740 ymcA 254544..254975 (-) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  HX0037_RS00745 miaB 254978..256507 (-) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  HX0037_RS00750 - 256650..257828 (-) 1179 WP_029325912.1 glycine C-acetyltransferase -
  HX0037_RS00755 tdh 257841..258887 (-) 1047 WP_043867101.1 L-threonine 3-dehydrogenase -
  HX0037_RS00760 spoVS 259146..259406 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=831325 HX0037_RS00740 WP_003154113.1 254544..254975(-) (ymcA) [Bacillus amyloliquefaciens strain HX0037]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=831325 HX0037_RS00740 WP_003154113.1 254544..254975(-) (ymcA) [Bacillus amyloliquefaciens strain HX0037]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCTGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATCCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACAGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916