Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   OPT59_RS08135 Genome accession   NZ_CP125360
Coordinates   1615618..1616655 (-) Length   345 a.a.
NCBI ID   WP_065355406.1    Uniprot ID   A0AB38XZ54
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_120444     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1610618..1621655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT59_RS08110 (OPT59_08110) rbsC 1610641..1611582 (-) 942 WP_022554979.1 hypothetical protein -
  OPT59_RS08115 (OPT59_08115) - 1611584..1613061 (-) 1478 Protein_1548 sugar ABC transporter ATP-binding protein -
  OPT59_RS08120 (OPT59_08120) rbsD 1613077..1613475 (-) 399 WP_003051896.1 D-ribose pyranase -
  OPT59_RS08125 (OPT59_08125) rbsK 1613450..1614361 (-) 912 WP_003053680.1 ribokinase -
  OPT59_RS08130 (OPT59_08130) - 1614354..1615337 (-) 984 WP_003053684.1 LacI family DNA-binding transcriptional regulator -
  OPT59_RS08135 (OPT59_08135) sepM 1615618..1616655 (-) 1038 WP_065355406.1 SepM family pheromone-processing serine protease Regulator
  OPT59_RS08140 (OPT59_08140) coaD 1616642..1617133 (-) 492 WP_003051905.1 pantetheine-phosphate adenylyltransferase -
  OPT59_RS08145 (OPT59_08145) rsmD 1617123..1617662 (-) 540 WP_014612463.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OPT59_RS08150 (OPT59_08150) asnA 1617856..1618848 (-) 993 WP_003055679.1 aspartate--ammonia ligase -
  OPT59_RS08155 (OPT59_08155) arcC 1619174..1620124 (-) 951 WP_014612465.1 carbamate kinase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37630.20 Da        Isoelectric Point: 9.4270

>NTDB_id=831286 OPT59_RS08135 WP_065355406.1 1615618..1616655(-) (sepM) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
MKTIKKIKWWLINLIALVALLIVLFFPLPYYVEMPGGAYDIRSVVKVNGKEDKDKGSYQFVAVSLSRASLAQLLYAWLTP
FTEISSVEDTTGGYSDADYIRINQFYMETSQNAAVYQALTLADKPVTLDYKGVYVLDISKDSTFKGTLNLADTVTGVNHK
QFTSSTELVDYVSHLKLGDKVTVQFISNSEPKSETGRIIKLKNGKNGIGIALTDHTKVNSAEKIEFSTQGVGGPSAGLMF
TLDIYDQINKEDLRKGRHIAGTGTIGKDGEVGDIGGAGLKVVAAADAGAEIFFVPNNPVDKAVKKANPKAISNYEEAKRA
AKQLKTKMKIVPVTTVQDALAYLRQ

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=831286 OPT59_RS08135 WP_065355406.1 1615618..1616655(-) (sepM) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
ATGAAAACAATTAAAAAAATTAAATGGTGGCTGATTAATCTAATTGCCCTCGTGGCTCTGCTTATCGTCCTTTTTTTCCC
TCTTCCTTATTATGTTGAAATGCCTGGCGGAGCCTATGACATTCGATCTGTGGTCAAGGTTAATGGCAAAGAAGATAAAG
ATAAAGGCTCCTATCAGTTTGTGGCAGTCAGTCTCAGTCGAGCCAGTTTAGCTCAGTTGCTCTATGCTTGGCTAACCCCT
TTTACTGAAATCAGTTCAGTTGAGGATACCACAGGCGGTTATAGCGATGCAGACTATATCCGCATTAATCAATTCTACAT
GGAAACCTCACAAAATGCTGCGGTCTATCAGGCATTGACCTTGGCAGACAAACCAGTTACTTTGGACTACAAAGGGGTAT
ATGTGTTAGATATTAGCAAGGATTCAACCTTTAAAGGTACTTTAAACTTAGCAGATACGGTAACGGGAGTGAATCACAAA
CAATTTACGAGTTCAACAGAACTTGTGGACTATGTCTCTCATTTAAAACTTGGTGATAAGGTGACTGTGCAGTTTATTAG
TAACAGCGAACCTAAGTCTGAAACAGGTCGTATCATCAAACTAAAAAATGGTAAAAATGGTATCGGCATTGCTTTAACAG
ACCATACTAAAGTCAATTCAGCAGAGAAAATCGAGTTTAGTACCCAAGGTGTTGGGGGTCCTAGCGCAGGCTTAATGTTT
ACATTAGATATCTACGACCAAATTAATAAAGAAGACCTTCGTAAAGGAAGACATATCGCCGGGACAGGAACCATTGGTAA
AGATGGTGAAGTTGGAGATATTGGCGGTGCGGGTCTTAAGGTCGTTGCTGCTGCAGATGCTGGTGCTGAGATTTTCTTTG
TGCCGAATAATCCTGTGGATAAAGCTGTTAAAAAAGCCAATCCAAAAGCTATTAGCAATTATGAAGAGGCCAAGCGAGCA
GCCAAGCAGTTAAAAACAAAAATGAAAATTGTTCCTGTAACAACTGTTCAGGATGCCCTAGCCTACCTTCGTCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

71.304

100

0.713