Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QJQ50_RS00050 Genome accession   NZ_CP125315
Coordinates   10924..11514 (+) Length   196 a.a.
NCBI ID   WP_032963958.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain k32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5924..16514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJQ50_RS00030 (QJQ50_00030) gyrA 6540..9152 (+) 2613 WP_032963962.1 DNA gyrase subunit A -
  QJQ50_RS00035 (QJQ50_00035) deoC 9226..9930 (-) 705 WP_032963960.1 deoxyribose-phosphate aldolase -
  QJQ50_RS00040 (QJQ50_00040) ssb 10040..10471 (+) 432 WP_005690380.1 single-stranded DNA-binding protein -
  QJQ50_RS00045 (QJQ50_00045) rpsF 10598..10894 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  QJQ50_RS00050 (QJQ50_00050) ssb 10924..11514 (+) 591 WP_032963958.1 single-stranded DNA-binding protein Machinery gene
  QJQ50_RS00055 (QJQ50_00055) rpsR 11605..11841 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  QJQ50_RS00060 (QJQ50_00060) - 12141..12647 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  QJQ50_RS00065 (QJQ50_00065) - 12993..14471 (+) 1479 WP_005709833.1 cytochrome ubiquinol oxidase subunit I -
  QJQ50_RS00070 (QJQ50_00070) cydB 14464..15483 (+) 1020 WP_005709834.1 cytochrome d ubiquinol oxidase subunit II -
  QJQ50_RS00075 (QJQ50_00075) - 15523..15717 (+) 195 WP_005685667.1 hypothetical protein -
  QJQ50_RS00080 (QJQ50_00080) - 15796..16221 (-) 426 WP_005709835.1 CPBP family intramembrane metalloprotease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20990.69 Da        Isoelectric Point: 4.7278

>NTDB_id=831064 QJQ50_RS00050 WP_032963958.1 10924..11514(+) (ssb) [Lacticaseibacillus rhamnosus strain k32]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNDNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=831064 QJQ50_RS00050 WP_032963958.1 10924..11514(+) (ssb) [Lacticaseibacillus rhamnosus strain k32]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCGGCGGAGAATTTCGCAAACTTCACCAAGAAAGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGATAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.49

100

0.495