Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QKW62_RS09080 Genome accession   NZ_CP125310
Coordinates   1895359..1895973 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CF5125     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1890359..1900973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKW62_RS09060 (QKW62_09055) - 1890741..1892501 (-) 1761 WP_054528242.1 Lon protease family protein -
  QKW62_RS09065 (QKW62_09060) matP 1892687..1893139 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  QKW62_RS09070 (QKW62_09065) ompA 1893228..1894274 (-) 1047 WP_003035883.1 porin OmpA -
  QKW62_RS09075 (QKW62_09070) sulA 1894632..1895141 (-) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  QKW62_RS09080 (QKW62_09075) sxy/tfoX 1895359..1895973 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  QKW62_RS09085 (QKW62_09080) yccS 1895951..1898104 (-) 2154 WP_054528680.1 YccS family putative transporter -
  QKW62_RS09090 (QKW62_09085) - 1898123..1898569 (-) 447 WP_003035892.1 YccF domain-containing protein -
  QKW62_RS09095 (QKW62_09090) helD 1898695..1900749 (+) 2055 WP_054528243.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=831042 QKW62_RS09080 WP_003035889.1 1895359..1895973(+) (sxy/tfoX) [Citrobacter freundii strain CF5125]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=831042 QKW62_RS09080 WP_003035889.1 1895359..1895973(+) (sxy/tfoX) [Citrobacter freundii strain CF5125]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686