Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QMB36_RS06095 Genome accession   NZ_CP125300
Coordinates   1356050..1356766 (+) Length   238 a.a.
NCBI ID   WP_011267143.1    Uniprot ID   A0AAJ4E3K1
Organism   Pseudomonas syringae pv. syringae strain B48     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1351050..1361766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMB36_RS06075 (QMB36_06075) - 1351129..1351753 (+) 625 Protein_1193 glutathione S-transferase -
  QMB36_RS06080 (QMB36_06080) - 1351937..1352869 (+) 933 WP_011267141.1 ABC transporter ATP-binding protein -
  QMB36_RS06085 (QMB36_06085) - 1352866..1353654 (+) 789 WP_054091477.1 ABC transporter permease -
  QMB36_RS06090 (QMB36_06090) comA 1353791..1356007 (+) 2217 WP_054091478.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMB36_RS06095 (QMB36_06095) exbB 1356050..1356766 (+) 717 WP_011267143.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMB36_RS06100 (QMB36_06100) - 1356763..1357194 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  QMB36_RS06105 (QMB36_06105) lpxK 1357194..1358189 (+) 996 WP_054091479.1 tetraacyldisaccharide 4'-kinase -
  QMB36_RS06110 (QMB36_06110) - 1358207..1358392 (+) 186 WP_002552679.1 Trm112 family protein -
  QMB36_RS06115 (QMB36_06115) kdsB 1358389..1359153 (+) 765 WP_024639315.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMB36_RS06120 (QMB36_06120) murB 1359188..1360207 (+) 1020 WP_024642747.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.33 Da        Isoelectric Point: 7.3261

>NTDB_id=831021 QMB36_RS06095 WP_011267143.1 1356050..1356766(+) (exbB) [Pseudomonas syringae pv. syringae strain B48]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEQKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=831021 QMB36_RS06095 WP_011267143.1 1356050..1356766(+) (exbB) [Pseudomonas syringae pv. syringae strain B48]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCTTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAACAGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGGCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAACTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGTTGCTTG
GTTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGCTCCGGGGCCACCGCCAATGCCGGTGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACCGCGTCGGGTCTTATCGTAGCGATCCCGGCGATTTTCTTTCATCG
CTTTCTGCAGAGCCGCGTCGATGAGCTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.095

88.235

0.689