Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QL286_RS06650 Genome accession   NZ_CP125299
Coordinates   1400894..1401649 (+) Length   251 a.a.
NCBI ID   WP_283153927.1    Uniprot ID   -
Organism   Pseudalkalibacillus hwajinpoensis strain MABIK MI00000821     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395894..1406649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL286_RS06640 - 1397413..1398708 (+) 1296 WP_283153926.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QL286_RS06645 - 1398821..1400530 (+) 1710 WP_206759434.1 sensor domain-containing diguanylate cyclase -
  QL286_RS06650 comC 1400894..1401649 (+) 756 WP_283153927.1 A24 family peptidase Machinery gene
  QL286_RS06655 - 1401808..1402041 (+) 234 WP_283153928.1 hypothetical protein -
  QL286_RS06660 - 1402377..1403372 (+) 996 WP_194219393.1 SPOR domain-containing protein -
  QL286_RS06665 - 1403622..1404200 (+) 579 WP_194219394.1 Maf family protein -
  QL286_RS06670 radC 1404253..1404924 (+) 672 WP_194219641.1 DNA repair protein RadC -
  QL286_RS06675 - 1405027..1406064 (+) 1038 WP_194219395.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 27532.16 Da        Isoelectric Point: 9.2635

>NTDB_id=830976 QL286_RS06650 WP_283153927.1 1400894..1401649(+) (comC) [Pseudalkalibacillus hwajinpoensis strain MABIK MI00000821]
MGVILHSYLFLVGLALGSFYNVVGLRMPIKRSIVAPGSSCPTCERELSPLELVPVFSYLFQRGKCKGCASRISPIYAGVE
FATALLFTIAPFLVGWSKELVISYGLISLLVIIFVSDITYMLIPDRILLFFAAYFIVGRILVPMDPWYSPFIGAAGGFLL
LLLIAVISKGGMGGGDIKLFAVLGFVFGYQELLLVFFFSTLCGTIIGVTALLTGRVKRKQHIPFGPSIALGAIITYFYGQ
QILHWYISFLL

Nucleotide


Download         Length: 756 bp        

>NTDB_id=830976 QL286_RS06650 WP_283153927.1 1400894..1401649(+) (comC) [Pseudalkalibacillus hwajinpoensis strain MABIK MI00000821]
ATGGGGGTCATTTTACATAGTTATTTATTTCTAGTTGGGCTTGCACTTGGGTCTTTTTATAATGTTGTAGGTCTTCGGAT
GCCTATCAAACGATCGATTGTGGCCCCTGGCTCATCCTGTCCAACGTGTGAACGAGAGCTTTCACCGCTTGAGCTTGTGC
CGGTTTTCTCTTATTTATTCCAGCGCGGAAAATGCAAAGGCTGCGCGTCACGTATTTCACCGATATACGCCGGTGTTGAA
TTCGCTACGGCACTTCTTTTTACGATTGCACCGTTTTTGGTGGGATGGTCAAAAGAATTGGTCATTTCGTATGGATTGAT
TTCGCTTCTTGTCATTATTTTTGTTTCAGATATCACCTATATGCTTATTCCAGATCGTATTCTTCTCTTTTTTGCTGCTT
ACTTTATTGTTGGTCGAATCCTTGTTCCAATGGATCCGTGGTATAGCCCTTTTATTGGAGCGGCTGGAGGATTTTTATTA
CTCCTTCTCATTGCTGTTATTAGTAAAGGGGGAATGGGGGGCGGTGACATTAAATTATTTGCGGTACTAGGCTTCGTATT
TGGTTATCAGGAATTACTTCTTGTGTTTTTCTTTTCTACTTTATGTGGCACGATCATTGGCGTAACAGCGCTATTGACTG
GGAGAGTAAAGCGAAAGCAGCACATTCCGTTTGGGCCATCGATAGCGCTAGGGGCAATCATAACGTATTTTTATGGTCAA
CAAATCTTACACTGGTATATTAGTTTTCTTTTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-90)

Type IV leader peptidase family (Peptidase_A24)

(106-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

51.837

97.61

0.506