Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QEN71_RS01755 Genome accession   NZ_CP125295
Coordinates   383285..384802 (-) Length   505 a.a.
NCBI ID   WP_201651296.1    Uniprot ID   -
Organism   Paraburkholderia sabiae strain LMG 24235     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378285..389802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN71_RS01730 (QEN71_01730) - 379160..379795 (-) 636 WP_201651298.1 LON peptidase substrate-binding domain-containing protein -
  QEN71_RS01735 (QEN71_01735) rapZ 379854..380747 (-) 894 WP_201651297.1 RNase adapter RapZ -
  QEN71_RS01740 (QEN71_01740) hprK 380825..381793 (-) 969 WP_028365019.1 HPr(Ser) kinase/phosphatase -
  QEN71_RS01745 (QEN71_01745) - 381942..382457 (-) 516 WP_028365018.1 PTS sugar transporter subunit IIA -
  QEN71_RS01750 (QEN71_01750) hpf 382751..383110 (-) 360 WP_007579701.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  QEN71_RS01755 (QEN71_01755) rpoN/rpoN1 383285..384802 (-) 1518 WP_201651296.1 RNA polymerase factor sigma-54 Machinery gene
  QEN71_RS01760 (QEN71_01760) lptB 385032..385814 (-) 783 WP_201651295.1 LPS export ABC transporter ATP-binding protein -
  QEN71_RS01765 (QEN71_01765) lptA 385811..386488 (-) 678 WP_201651294.1 lipopolysaccharide transport periplasmic protein LptA -
  QEN71_RS01770 (QEN71_01770) lptC 386521..387114 (-) 594 WP_201651293.1 LPS export ABC transporter periplasmic protein LptC -
  QEN71_RS01775 (QEN71_01775) - 387111..387674 (-) 564 WP_201651292.1 HAD family hydrolase -
  QEN71_RS01780 (QEN71_01780) kdsD 387674..388657 (-) 984 WP_201651291.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55402.28 Da        Isoelectric Point: 4.8243

>NTDB_id=830948 QEN71_RS01755 WP_201651296.1 383285..384802(-) (rpoN/rpoN1) [Paraburkholderia sabiae strain LMG 24235]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAIAQNPLLEAEDDWIASPLRVAADGTVIAQTAQNAAPEEMS
SAPPSSSSTSSSESSDGGEPQGVDEYNGMSSDANGDSSQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRVT
QASPRDRALVTFLIESLDDDGYLTATFDEILADLPEELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLCRLDGSP
TRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLRDAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELNP
EVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=830948 QEN71_RS01755 WP_201651296.1 383285..384802(-) (rpoN/rpoN1) [Paraburkholderia sabiae strain LMG 24235]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAGCATCTTGCGCTGACACCACAACTGCAACAGTCCATCCGGCTGCTGCA
GCTGTCTACGCTTGAACTGCAACAGGAAGTCTCGATGGCGATCGCCCAGAATCCGCTGCTCGAAGCGGAGGACGACTGGA
TCGCGAGTCCGTTGCGCGTTGCCGCCGACGGCACCGTCATCGCGCAAACGGCGCAGAATGCCGCGCCGGAGGAAATGTCG
AGCGCACCGCCGTCGTCTTCGTCCACGTCTTCCAGTGAAAGCTCGGATGGCGGAGAGCCGCAGGGCGTTGACGAATACAA
CGGCATGAGTTCGGATGCAAACGGCGATTCGAGCCAATGGAATCTGGACGACTACGGCCGTTCGGGCAACGCATCGGACG
ACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACGACGCTGCGCGATCACCTGACTGCTCAACTTCGCGTGACG
CAGGCCAGTCCGCGCGACCGCGCGCTCGTCACGTTCCTGATCGAATCGCTCGATGACGACGGCTATCTGACGGCCACCTT
CGACGAAATACTCGCCGACCTGCCCGAAGAACTCGAAGTCGATACCGACGAACTGAACGCGGCACTCGCGTTGCTGCACA
GCTTCGACCCTGCTGGCGTCGGTGCGCGTTCGGCGTCCGAATGCCTGCGTTTGCAGCTGTGCCGGCTCGACGGGTCGCCA
ACCCGCACGCTCGCACTCGACATCGTTGCTCACCATCTGGAGCTGCTCGCCGCGCGTGATTTCACGCGTCTGCGCAAGTA
CCTGAAGGCCAGCGATGACGATCTGCGCGATGCACATGCACTGATCCGCTCGCTCGAACCGTTCCCTGGTGCAGCCTATG
GCAAGGCCGAAGCAGACTACGTCGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGCTGGCAGGCCGAACTGAACCCG
GAAGTCGTGCCCAAGCTGCGGATCAACCATCTGTACGCGAATATCCTGCGTAACAATCGTGGCGATCCGGGCAGTGGTTC
GCTGCGCCAGCAACTGCAGGAAGCACGCTGGTTGATCAAGAACATCCAGCAACGTTTCGAGACGATCCTGCGTGTCGCGC
AGGCAATTGTCGAGCGTCAAAAGAACTTTTTCGCCCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCT
GATACGCTGGGTTTACACGAGTCGACGGTATCGCGTGTGACAACCGGCAAGTACATGCTCACCCCATTCGGGACGCTTGA
ATTTAAGTACTTCTTCGGATCGCACGTATCCACCGACACCGGGGGCGCGGCCTCTTCCACGGCCATTCGCGCGCTCATCA
AGCAACTGATAGGAGCAGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCAGAACAGGGTTTC
GTCGTGGCGCGCCGTACAGTTGCGAAATACCGCGAAGCACTGAAGATCCCAGCAGTCAATCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(142-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.921

100

0.679