Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QL281_RS21245 Genome accession   NZ_CP125292
Coordinates   3987070..3987963 (+) Length   297 a.a.
NCBI ID   WP_144458855.1    Uniprot ID   A0AAQ3IEN3
Organism   Bacillus subtilis strain SRCM117797     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3982070..3992963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS21225 (QL281_21225) - 3982740..3984470 (+) 1731 WP_017694863.1 hypothetical protein -
  QL281_RS21230 (QL281_21230) ylqH 3984467..3984748 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  QL281_RS21235 (QL281_21235) sucC 3984921..3986078 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  QL281_RS21240 (QL281_21240) sucD 3986107..3987009 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  QL281_RS21245 (QL281_21245) dprA 3987070..3987963 (+) 894 WP_144458855.1 DNA-processing protein DprA Machinery gene
  QL281_RS21250 (QL281_21250) topA 3988151..3990226 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  QL281_RS21255 (QL281_21255) trmFO 3990302..3991609 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QL281_RS21260 (QL281_21260) xerC 3991677..3992591 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33020.28 Da        Isoelectric Point: 9.6984

>NTDB_id=830942 QL281_RS21245 WP_144458855.1 3987070..3987963(+) (dprA) [Bacillus subtilis strain SRCM117797]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKDWVIVSGLASGIDGMSHAAS
IKEKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=830942 QL281_RS21245 WP_144458855.1 3987070..3987963(+) (dprA) [Bacillus subtilis strain SRCM117797]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTTCTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTGGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGAGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGACCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACGAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377