Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QL281_RS20410 Genome accession   NZ_CP125292
Coordinates   3820756..3821034 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM117797     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3815756..3826034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS20390 (QL281_20390) - 3816944..3817855 (+) 912 WP_041335746.1 ketopantoate reductase family protein -
  QL281_RS20395 (QL281_20395) ampS 3817889..3819121 (-) 1233 WP_003232341.1 aminopeptidase -
  QL281_RS20400 (QL281_20400) ykpC 3819230..3819364 (-) 135 WP_003238865.1 protein YkpC -
  QL281_RS20405 (QL281_20405) mreBH 3819465..3820472 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  QL281_RS20410 (QL281_20410) abrB 3820756..3821034 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  QL281_RS20415 (QL281_20415) kinC 3821224..3822510 (+) 1287 WP_041335743.1 two-component sensor histidine kinase KinC -
  QL281_RS20420 (QL281_20420) ykqA 3822526..3823353 (+) 828 WP_041335740.1 gamma-glutamylcyclotransferase -
  QL281_RS20425 (QL281_20425) ktrC 3823416..3824081 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  QL281_RS20430 (QL281_20430) ade 3824237..3825970 (+) 1734 WP_041335734.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=830941 QL281_RS20410 WP_003244728.1 3820756..3821034(+) (abrB) [Bacillus subtilis strain SRCM117797]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=830941 QL281_RS20410 WP_003244728.1 3820756..3821034(+) (abrB) [Bacillus subtilis strain SRCM117797]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTGGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576