Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QL281_RS18135 Genome accession   NZ_CP125292
Coordinates   3404996..3405574 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM117797     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3399996..3410574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS18115 (QL281_18115) hemAT 3400511..3401809 (-) 1299 WP_041351953.1 heme-based aerotactic transducer HemAT -
  QL281_RS18120 (QL281_18120) yhfW 3401948..3403481 (-) 1534 Protein_3507 FAD-dependent oxidoreductase -
  QL281_RS18125 (QL281_18125) yhxC 3403585..3404442 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  QL281_RS18130 (QL281_18130) yhzC 3404470..3404703 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  QL281_RS18135 (QL281_18135) comK 3404996..3405574 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  QL281_RS18140 (QL281_18140) yhxD 3405619..3406518 (-) 900 WP_017695343.1 SDR family oxidoreductase -
  QL281_RS18145 (QL281_18145) yhjA 3406735..3407004 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  QL281_RS18150 (QL281_18150) yhjB 3407048..3408517 (-) 1470 WP_017695341.1 sodium:solute symporter -
  QL281_RS18155 (QL281_18155) yhjC 3408514..3408714 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QL281_RS18160 (QL281_18160) - 3408913..3409284 (-) 372 WP_014476361.1 hypothetical protein -
  QL281_RS18165 (QL281_18165) yhjE 3409436..3410059 (+) 624 WP_010886465.1 VTT domain-containing protein -
  QL281_RS18170 (QL281_18170) lepB 3410061..3410567 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=830927 QL281_RS18135 WP_003245329.1 3404996..3405574(+) (comK) [Bacillus subtilis strain SRCM117797]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=830927 QL281_RS18135 WP_003245329.1 3404996..3405574(+) (comK) [Bacillus subtilis strain SRCM117797]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1