Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QL281_RS04925 Genome accession   NZ_CP125292
Coordinates   863859..864605 (-) Length   248 a.a.
NCBI ID   WP_026113741.1    Uniprot ID   A0AAQ3EXH2
Organism   Bacillus subtilis strain SRCM117797     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 858859..869605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS04895 (QL281_04895) - 859187..859621 (+) 435 WP_283010038.1 helix-turn-helix transcriptional regulator -
  QL281_RS04900 (QL281_04900) - 859635..860081 (+) 447 WP_060399203.1 ImmA/IrrE family metallo-endopeptidase -
  QL281_RS04905 (QL281_04905) - 860112..861548 (+) 1437 WP_254003336.1 recombinase family protein -
  QL281_RS04910 (QL281_04910) radC 861547..861968 (-) 422 Protein_976 DNA repair protein RadC -
  QL281_RS04915 (QL281_04915) maf 862005..862574 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  QL281_RS04920 (QL281_04920) spoIIB 862727..863725 (-) 999 WP_017697540.1 stage II sporulation protein SpoIIB -
  QL281_RS04925 (QL281_04925) comC 863859..864605 (-) 747 WP_026113741.1 A24 family peptidase Machinery gene
  QL281_RS04930 (QL281_04930) folC 864745..866037 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QL281_RS04935 (QL281_04935) valS 866097..868739 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  QL281_RS04940 (QL281_04940) - 869187..869378 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=830890 QL281_RS04925 WP_026113741.1 863859..864605(-) (comC) [Bacillus subtilis strain SRCM117797]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=830890 QL281_RS04925 WP_026113741.1 863859..864605(-) (comC) [Bacillus subtilis strain SRCM117797]
ATGCTATCCATTCTTTTTATCTTTGGGCTTATTCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCTCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGTTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGGGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTAATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992