Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QL281_RS03095 Genome accession   NZ_CP125292
Coordinates   554936..555703 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain SRCM117797     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 549936..560703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS03075 (QL281_03075) ppsR 550111..550923 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  QL281_RS03080 (QL281_03080) ccpN 550949..551587 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  QL281_RS03085 (QL281_03085) glyS 551720..553759 (-) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  QL281_RS03090 (QL281_03090) glyQ 553752..554639 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  QL281_RS03095 (QL281_03095) recO 554936..555703 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  QL281_RS03100 (QL281_03100) yqzL 555740..555883 (-) 144 WP_003230053.1 YqzL family protein -
  QL281_RS03105 (QL281_03105) era 556031..556936 (-) 906 WP_144459388.1 GTPase Era -
  QL281_RS03110 (QL281_03110) cdd 556917..557327 (-) 411 WP_144459386.1 cytidine deaminase -
  QL281_RS03115 (QL281_03115) unpK 557446..557817 (-) 372 WP_041333781.1 diacylglycerol kinase family protein -
  QL281_RS03120 (QL281_03120) ybeY 557798..558271 (-) 474 WP_144459385.1 rRNA maturation RNase YbeY -
  QL281_RS03125 (QL281_03125) pgpH 558272..560407 (-) 2136 WP_080031083.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=830883 QL281_RS03095 WP_014477369.1 554936..555703(-) (recO) [Bacillus subtilis strain SRCM117797]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=830883 QL281_RS03095 WP_014477369.1 554936..555703(-) (recO) [Bacillus subtilis strain SRCM117797]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGCTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996