Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QL281_RS02560 Genome accession   NZ_CP125292
Coordinates   462734..463537 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117797     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 457734..468537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS02535 (QL281_02535) glpQ 458872..459603 (-) 732 WP_041334913.1 glycerophosphodiester phosphodiesterase -
  QL281_RS02540 (QL281_02540) yqiI 459682..460302 (-) 621 WP_072557058.1 N-acetylmuramoyl-L-alanine amidase -
  QL281_RS02545 (QL281_02545) - 460322..460618 (-) 297 WP_041334918.1 hypothetical protein -
  QL281_RS02550 (QL281_02550) - 460926..461078 (+) 153 WP_129137781.1 hypothetical protein -
  QL281_RS02555 (QL281_02555) yqiG 461151..462269 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  QL281_RS02560 (QL281_02560) spo0A 462734..463537 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QL281_RS02565 (QL281_02565) spoIVB 463813..465093 (-) 1281 WP_041334924.1 SpoIVB peptidase -
  QL281_RS02570 (QL281_02570) recN 465268..466998 (-) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  QL281_RS02575 (QL281_02575) argR 467035..467484 (-) 450 WP_017696434.1 arginine repressor ArgR -
  QL281_RS02580 (QL281_02580) yqxC 467582..468427 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=830872 QL281_RS02560 WP_003226427.1 462734..463537(-) (spo0A) [Bacillus subtilis strain SRCM117797]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=830872 QL281_RS02560 WP_003226427.1 462734..463537(-) (spo0A) [Bacillus subtilis strain SRCM117797]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1