Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QL281_RS01555 Genome accession   NZ_CP125292
Coordinates   281363..281983 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117797     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 276363..286983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS01515 (QL281_01515) ypqA 276792..277211 (+) 420 WP_041336373.1 Hsp20/alpha crystallin family protein -
  QL281_RS01520 (QL281_01520) yppG 277232..277609 (-) 378 WP_004398696.1 YppG family protein -
  QL281_RS01525 (QL281_01525) yppF 277797..277985 (+) 189 WP_003230690.1 YppF family protein -
  QL281_RS01530 (QL281_01530) - 278217..279339 (+) 1123 Protein_302 IS256 family transposase -
  QL281_RS01535 (QL281_01535) yppE 279370..279741 (-) 372 WP_015714151.1 YppE family protein -
  QL281_RS01540 (QL281_01540) yppD 279787..280032 (-) 246 WP_004398488.1 YppD family protein -
  QL281_RS01545 (QL281_01545) sspM 280231..280335 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QL281_RS01550 (QL281_01550) yppC 280360..281322 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  QL281_RS01555 (QL281_01555) recU 281363..281983 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  QL281_RS01560 (QL281_01560) ponA 282005..284743 (+) 2739 WP_283009968.1 PBP1A family penicillin-binding protein -
  QL281_RS01565 (QL281_01565) ypoC 284819..285313 (-) 495 WP_041351582.1 YpoC family protein -
  QL281_RS01570 (QL281_01570) nth 285310..285969 (-) 660 WP_009967580.1 endonuclease III -
  QL281_RS01575 (QL281_01575) dnaD 285988..286686 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=830871 QL281_RS01555 WP_004399067.1 281363..281983(+) (recU) [Bacillus subtilis strain SRCM117797]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=830871 QL281_RS01555 WP_004399067.1 281363..281983(+) (recU) [Bacillus subtilis strain SRCM117797]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1