Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   UMY61_RS04745 Genome accession   NZ_CP139665
Coordinates   965210..965692 (-) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli strain TP10-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 960210..970692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMY61_RS04730 (UMY61_04730) ypjF 964296..964625 (-) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -
  UMY61_RS04735 (UMY61_04735) yfjZ 964646..964963 (-) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  UMY61_RS04740 (UMY61_04740) ypjJ 965001..965201 (-) 201 WP_001395452.1 DUF987 domain-containing protein -
  UMY61_RS04745 (UMY61_04745) radC 965210..965692 (-) 483 WP_001407480.1 RadC family protein Machinery gene
  UMY61_RS04750 (UMY61_04750) yfjX 965701..966159 (-) 459 WP_000211841.1 antirestriction protein -
  UMY61_RS04755 - 966172..966294 (+) 123 WP_001407482.1 hypothetical protein -
  UMY61_RS04760 (UMY61_04755) - 966262..966446 (-) 185 Protein_927 DUF905 family protein -
  UMY61_RS04765 (UMY61_04760) yfjW 967057..968760 (-) 1704 WP_000896263.1 protein YfjW -
  UMY61_RS04770 (UMY61_04765) - 968902..969911 (+) 1010 Protein_929 arsenic transporter -
  UMY61_RS04775 (UMY61_04770) - 969924..970076 (+) 153 Protein_930 glutaredoxin domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=830865 UMY61_RS04745 WP_001407480.1 965210..965692(-) (radC) [Escherichia coli strain TP10-1]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=830865 UMY61_RS04745 WP_001407480.1 965210..965692(-) (radC) [Escherichia coli strain TP10-1]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375