Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QL280_RS05460 Genome accession   NZ_CP125291
Coordinates   1095346..1096155 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain 105_Kz     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090346..1101155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL280_RS05440 (QL280_05440) - 1092680..1093666 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  QL280_RS05445 (QL280_05445) - 1093967..1094710 (-) 744 Protein_1079 ion transporter -
  QL280_RS05450 (QL280_05450) - 1094757..1095011 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QL280_RS05455 (QL280_05455) - 1095013..1095255 (-) 243 WP_000208080.1 DUF6290 family protein -
  QL280_RS05460 (QL280_05460) vicX 1095346..1096155 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  QL280_RS05465 (QL280_05465) micB 1096157..1097506 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  QL280_RS05470 (QL280_05470) micA 1097499..1098203 (-) 705 WP_000722076.1 response regulator YycF Regulator
  QL280_RS05475 (QL280_05475) mutY 1098258..1099433 (-) 1176 WP_000886153.1 A/G-specific adenine glycosylase -
  QL280_RS05480 (QL280_05480) - 1099530..1099655 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=830817 QL280_RS05460 WP_001289493.1 1095346..1096155(-) (vicX) [Streptococcus pneumoniae strain 105_Kz]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=830817 QL280_RS05460 WP_001289493.1 1095346..1096155(-) (vicX) [Streptococcus pneumoniae strain 105_Kz]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCATCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTTCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGGCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGACCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773