Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   QL280_RS02550 Genome accession   NZ_CP125291
Coordinates   505737..506003 (+) Length   88 a.a.
NCBI ID   WP_001810535.1    Uniprot ID   A0A098Z1L6
Organism   Streptococcus pneumoniae strain 105_Kz     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 505208..505432 505737..506003 flank 305


Gene organization within MGE regions


Location: 505208..506003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL280_RS02545 (QL280_02545) - 505208..505611 (+) 404 Protein_501 helix-turn-helix domain-containing protein -
  QL280_RS02550 (QL280_02550) HI0659 505737..506003 (+) 267 WP_001810535.1 helix-turn-helix transcriptional regulator Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9608.13 Da        Isoelectric Point: 4.4893

>NTDB_id=830807 QL280_RS02550 WP_001810535.1 505737..506003(+) (HI0659) [Streptococcus pneumoniae strain 105_Kz]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=830807 QL280_RS02550 WP_001810535.1 505737..506003(+) (HI0659) [Streptococcus pneumoniae strain 105_Kz]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAGTC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z1L6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523