Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QLX65_RS17660 Genome accession   NZ_CP125289
Coordinates   3537533..3538222 (-) Length   229 a.a.
NCBI ID   WP_198317760.1    Uniprot ID   -
Organism   Bacillus velezensis strain SF334     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3532533..3543222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX65_RS17625 (QLX65_17625) fliW 3532624..3533055 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  QLX65_RS17630 (QLX65_17630) - 3533085..3533654 (-) 570 WP_003151397.1 DUF6470 family protein -
  QLX65_RS17635 (QLX65_17635) flgL 3533745..3534662 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  QLX65_RS17640 (QLX65_17640) flgK 3534674..3536191 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  QLX65_RS17645 (QLX65_17645) - 3536207..3536689 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QLX65_RS17650 (QLX65_17650) flgM 3536704..3536970 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QLX65_RS17655 (QLX65_17655) - 3537040..3537459 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  QLX65_RS17660 (QLX65_17660) comFC 3537533..3538222 (-) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  QLX65_RS17665 (QLX65_17665) - 3538228..3538512 (-) 285 WP_003151389.1 competence protein ComFB -
  QLX65_RS17670 (QLX65_17670) comFA 3538570..3539955 (-) 1386 WP_095318332.1 DEAD/DEAH box helicase Machinery gene
  QLX65_RS17675 (QLX65_17675) - 3540063..3540911 (-) 849 WP_003151387.1 DegV family protein -
  QLX65_RS17680 (QLX65_17680) degU 3541009..3541698 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QLX65_RS17685 (QLX65_17685) degS 3541775..3542938 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25262.97 Da        Isoelectric Point: 8.2933

>NTDB_id=830774 QLX65_RS17660 WP_198317760.1 3537533..3538222(-) (comFC) [Bacillus velezensis strain SF334]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEMRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=830774 QLX65_RS17660 WP_198317760.1 3537533..3538222(-) (comFC) [Bacillus velezensis strain SF334]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAATGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603