Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QLX65_RS15770 Genome accession   NZ_CP125289
Coordinates   3165329..3165973 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SF334     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3160329..3170973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX65_RS15735 (QLX65_15735) - 3161514..3161945 (+) 432 WP_044052951.1 Na(+)/H(+) antiporter subunit B -
  QLX65_RS15740 (QLX65_15740) - 3161945..3162286 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  QLX65_RS15745 (QLX65_15745) - 3162279..3163760 (+) 1482 WP_044052950.1 Na+/H+ antiporter subunit D -
  QLX65_RS15750 (QLX65_15750) - 3163766..3164242 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  QLX65_RS15755 (QLX65_15755) - 3164242..3164526 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  QLX65_RS15760 (QLX65_15760) mnhG 3164510..3164884 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  QLX65_RS15765 (QLX65_15765) - 3164924..3165307 (-) 384 WP_044052949.1 hotdog fold thioesterase -
  QLX65_RS15770 (QLX65_15770) comA 3165329..3165973 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  QLX65_RS15775 (QLX65_15775) comP 3166054..3168357 (-) 2304 WP_003152050.1 histidine kinase Regulator
  QLX65_RS15780 (QLX65_15780) comX 3168377..3168556 (-) 180 WP_306383677.1 competence pheromone ComX -
  QLX65_RS15785 (QLX65_15785) comQ 3168510..3169496 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  QLX65_RS15790 (QLX65_15790) degQ 3169627..3169767 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  QLX65_RS15795 (QLX65_15795) - 3170233..3170574 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=830768 QLX65_RS15770 WP_003152052.1 3165329..3165973(-) (comA) [Bacillus velezensis strain SF334]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=830768 QLX65_RS15770 WP_003152052.1 3165329..3165973(-) (comA) [Bacillus velezensis strain SF334]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864