Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QLX65_RS13090 Genome accession   NZ_CP125289
Coordinates   2643003..2643770 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain SF334     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2638003..2648770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX65_RS13070 (QLX65_13070) - 2638205..2639017 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  QLX65_RS13075 (QLX65_13075) ccpN 2639043..2639681 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  QLX65_RS13080 (QLX65_13080) glyS 2639782..2641821 (-) 2040 WP_003152986.1 glycine--tRNA ligase subunit beta -
  QLX65_RS13085 (QLX65_13085) glyQ 2641814..2642701 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  QLX65_RS13090 (QLX65_13090) recO 2643003..2643770 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  QLX65_RS13095 (QLX65_13095) - 2643807..2643950 (-) 144 WP_007408286.1 YqzL family protein -
  QLX65_RS13100 (QLX65_13100) era 2644106..2645011 (-) 906 WP_003152978.1 GTPase Era -
  QLX65_RS13105 (QLX65_13105) - 2644992..2645402 (-) 411 WP_003152976.1 cytidine deaminase -
  QLX65_RS13110 (QLX65_13110) - 2645526..2645900 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  QLX65_RS13115 (QLX65_13115) ybeY 2645881..2646354 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  QLX65_RS13120 (QLX65_13120) - 2646355..2648487 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=830757 QLX65_RS13090 WP_003152982.1 2643003..2643770(-) (recO) [Bacillus velezensis strain SF334]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=830757 QLX65_RS13090 WP_003152982.1 2643003..2643770(-) (recO) [Bacillus velezensis strain SF334]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894