Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R8623_RS08280 Genome accession   NZ_AP026928
Coordinates   1621901..1623172 (+) Length   423 a.a.
NCBI ID   WP_001113213.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700406     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1616901..1628172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8623_RS08240 (PC0401_16220) - 1617598..1618071 (-) 474 WP_000631889.1 GNAT family N-acetyltransferase -
  R8623_RS08245 (PC0401_16230) - 1618068..1618496 (-) 429 WP_024477876.1 NUDIX hydrolase -
  R8623_RS08250 (PC0401_16240) - 1618477..1619565 (-) 1089 WP_024477877.1 site-2 protease family protein -
  R8623_RS08255 (PC0401_16250) - 1619584..1620054 (-) 471 WP_000257084.1 DUF3013 family protein -
  R8623_RS08260 (PC0401_16260) - 1620345..1620797 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R8623_RS08265 (PC0401_16270) - 1620834..1621013 (-) 180 WP_001132284.1 type II toxin-antitoxin system HicA family toxin -
  R8623_RS08270 (PC0401_16280) - 1621150..1621398 (-) 249 WP_000797240.1 hypothetical protein -
  R8623_RS08275 (PC0401_16290) - 1621388..1621609 (-) 222 WP_000425689.1 hypothetical protein -
  R8623_RS08280 (PC0401_16300) rarA 1621901..1623172 (+) 1272 WP_001113213.1 replication-associated recombination protein A Machinery gene
  R8623_RS08290 (PC0401_16310) - 1623722..1625041 (-) 1320 WP_024477878.1 glycoside hydrolase family 32 protein -
  R8623_RS08295 (PC0401_16320) - 1625051..1626667 (-) 1617 WP_000669745.1 ABC transporter substrate-binding protein -
  R8623_RS08300 (PC0401_16330) - 1626696..1627586 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46980.41 Da        Isoelectric Point: 5.9140

>NTDB_id=83070 R8623_RS08280 WP_001113213.1 1621901..1623172(+) (rarA) [Streptococcus pneumoniae strain PZ900700406]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=83070 R8623_RS08280 WP_001113213.1 1621901..1623172(+) (rarA) [Streptococcus pneumoniae strain PZ900700406]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTAAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.191

96.69

0.563

Multiple sequence alignment