Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R3F75_RS25215 Genome accession   NZ_CP139649
Coordinates   4833210..4834196 (+) Length   328 a.a.
NCBI ID   WP_039148432.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain CNPSo 34     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4828210..4839196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3F75_RS25200 (R3F75_25190) - 4828216..4830249 (+) 2034 WP_039148423.1 NAD(+) synthase -
  R3F75_RS25205 (R3F75_25195) - 4830726..4831541 (+) 816 WP_039148426.1 sugar phosphate isomerase/epimerase family protein -
  R3F75_RS25210 (R3F75_25200) - 4831572..4833209 (+) 1638 WP_039148429.1 ABC transporter substrate-binding protein -
  R3F75_RS25215 (R3F75_25205) amiE 4833210..4834196 (+) 987 WP_039148432.1 ABC transporter ATP-binding protein Regulator
  R3F75_RS25220 (R3F75_25210) - 4834193..4835185 (+) 993 WP_039148435.1 ABC transporter ATP-binding protein -
  R3F75_RS25225 (R3F75_25215) - 4835185..4836114 (+) 930 WP_039148438.1 ABC transporter permease -
  R3F75_RS25230 (R3F75_25220) - 4836111..4837031 (+) 921 WP_148311975.1 ABC transporter permease -
  R3F75_RS25235 (R3F75_25225) - 4837079..4838455 (-) 1377 WP_039148441.1 SagB family peptide dehydrogenase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 34335.97 Da        Isoelectric Point: 7.0762

>NTDB_id=830647 R3F75_RS25215 WP_039148432.1 4833210..4834196(+) (amiE) [Bradyrhizobium japonicum strain CNPSo 34]
MATPLVSIQGLNVAFNGVSVLRGVDLALQKGEAVGLVGESGSGKSVTWLAALGLLPRHAKVSGSVRLDGREILGAAASKL
DRVRGGRVAMIFQDPASALNPVLTIRKQLCEALALHRDLSGEAVKAEARRLLDLVGIPDAARRLEAYPHEFSGGQVQRIM
IAMALAGNPDLLIADEPTTALDATIQAQILELLSTIRREMSMAMVLISHDLGVVAENCDRVAVMYAGRIVEQAPANQLFA
DPVHPYAQGLIGALPPLDGPRRRLTAIPGTVPDPAHMPSGCAFAPRCALAAEPCGLAVPSLAPIANDRVVACIRAEASHR
ALLGIAAE

Nucleotide


Download         Length: 987 bp        

>NTDB_id=830647 R3F75_RS25215 WP_039148432.1 4833210..4834196(+) (amiE) [Bradyrhizobium japonicum strain CNPSo 34]
GTGGCAACGCCGCTGGTCAGCATCCAGGGCCTCAACGTCGCCTTCAACGGCGTATCGGTCTTGCGCGGCGTCGATCTCGC
TTTGCAGAAGGGCGAGGCCGTCGGCCTCGTCGGCGAGTCCGGCTCCGGCAAGTCAGTGACGTGGCTTGCTGCGCTCGGCC
TCTTGCCGCGGCATGCAAAAGTCTCGGGCTCCGTGCGGCTCGACGGACGCGAAATCCTCGGCGCAGCCGCGAGTAAGCTT
GACCGGGTGCGGGGCGGGCGGGTCGCCATGATTTTTCAGGACCCCGCAAGCGCGCTCAATCCGGTGCTCACCATTCGCAA
GCAGCTGTGCGAGGCTTTGGCGCTGCATCGCGATCTCTCGGGCGAGGCGGTGAAGGCCGAAGCGCGGCGGCTGCTCGATC
TCGTCGGCATTCCCGATGCGGCGCGGCGGCTCGAAGCCTATCCGCACGAATTCTCCGGCGGCCAGGTCCAGCGCATCATG
ATCGCGATGGCGCTGGCCGGAAATCCCGATCTGCTTATCGCGGACGAGCCGACCACGGCGCTCGACGCCACCATCCAGGC
GCAGATCCTGGAGCTGCTCTCGACCATCCGCCGCGAGATGAGCATGGCGATGGTGCTGATCAGCCATGATCTCGGCGTCG
TCGCGGAGAACTGCGACCGCGTCGCCGTGATGTATGCCGGCCGCATCGTCGAGCAGGCGCCCGCCAACCAGCTCTTTGCC
GATCCGGTGCATCCCTACGCGCAGGGCCTGATCGGCGCACTGCCGCCGCTCGACGGACCGCGTCGGCGTCTCACGGCCAT
TCCGGGGACCGTTCCCGATCCCGCGCACATGCCAAGCGGCTGTGCCTTCGCGCCGCGCTGCGCGCTGGCGGCCGAGCCGT
GCGGACTTGCCGTGCCGAGCCTGGCGCCGATCGCGAACGATCGCGTGGTTGCCTGTATCCGTGCCGAGGCCTCGCACCGT
GCGCTGCTCGGGATCGCCGCCGAATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-294)

ABC transporter (ABC_tran)

(21-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

46.377

84.146

0.39
  amiE Streptococcus thermophilus LMD-9

46.377

84.146

0.39
  amiE Streptococcus salivarius strain HSISS4

45.126

84.451

0.381
  oppD Streptococcus mutans UA159

42.414

88.415

0.375