Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   R3F75_RS24590 Genome accession   NZ_CP139649
Coordinates   4710619..4713597 (-) Length   992 a.a.
NCBI ID   WP_039148265.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain CNPSo 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4705619..4718597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3F75_RS24565 (R3F75_24560) - 4705687..4706454 (+) 768 WP_014495098.1 AAA family ATPase -
  R3F75_RS24570 (R3F75_24565) - 4707270..4707839 (+) 570 WP_014495099.1 SRPBCC family protein -
  R3F75_RS24575 (R3F75_24570) - 4707842..4708795 (+) 954 WP_039148259.1 cytochrome D1 domain-containing protein -
  R3F75_RS24580 (R3F75_24575) - 4708801..4709721 (-) 921 WP_039148262.1 nucleoside hydrolase -
  R3F75_RS24585 (R3F75_24580) - 4709757..4710398 (-) 642 WP_039156915.1 HAD-IA family hydrolase -
  R3F75_RS24590 (R3F75_24585) uvrA 4710619..4713597 (-) 2979 WP_039148265.1 excinuclease ABC subunit UvrA Machinery gene
  R3F75_RS24595 (R3F75_24590) - 4713913..4714671 (-) 759 WP_039148268.1 outer membrane protein -
  R3F75_RS24600 (R3F75_24595) - 4714814..4715566 (-) 753 WP_039148271.1 outer membrane protein -
  R3F75_RS24605 (R3F75_24600) - 4715790..4716479 (-) 690 WP_028153430.1 outer membrane protein -
  R3F75_RS24610 (R3F75_24605) - 4716714..4717481 (-) 768 WP_039148274.1 outer membrane protein -
  R3F75_RS24615 (R3F75_24610) ssb 4717933..4718436 (+) 504 WP_039148277.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 992 a.a.        Molecular weight: 109418.96 Da        Isoelectric Point: 7.4200

>NTDB_id=830644 R3F75_RS24590 WP_039148265.1 4710619..4713597(-) (uvrA) [Bradyrhizobium japonicum strain CNPSo 34]
MDEVIKAKRQQQNAGSSLRAITIRGAREHNLKNVDVEIPRDKLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ
FLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALP
EGTRLYLLAPVVRGRKGEYRKELAEWLKKGFQRVKIDGTFHELAEAPTLDKKFPHDIDVVVDRIVVRADIGQRLAESFET
ALKLAEGLAVVEFADAPAAAAPAEEKKKTAKIHDKSGPERILFSEKFACPVSGFTIPEIEPRLFSFNNPYGACPACGGLG
VEQHVDEDLVIPDKELAIGKGAIAPWAKSSSPYYVQTLTALGKHYKFTLTTKWKDLPKKTQNAILLGSGEDEIKFSYEDG
VRSYDTKKPFEGVITNINRRYRETESEWAREELAKYFHDVPCEGCKGFRLKPEALCVKVGGKHIGEISELSVRKAGEWFE
TVPEALNTQQNEIAGRILKEIRERLTFLLDVGLNYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQR
DNARLLDTLKRLRDLGNTVIVVEHDEDAILLADYVLDIGPGAGMHGGNIVAEGTPAEIMRNPKSLTGKYLTGELEVEVPE
RRPPNHRRTIKVVNARGNNLKNVTAEIPLGLFTAVTGVSGGGKSTLLIDTLYKAIARKLNGASEGAAPHDRIEGLEHIDK
IIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYEPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCD
VCKGKRYNRETLEVLFKGKSIADVLDMTVEEAAEFFKAVPRVRETFQTLHRVGLDYIHVGQQATTLSGGEAQRVKLAKEL
SKRATGRTLYILDEPTTGLHFHDVKKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDI
AKAPRSYTGKFLEPVLKKARKPKRRSTSEAAE

Nucleotide


Download         Length: 2979 bp        

>NTDB_id=830644 R3F75_RS24590 WP_039148265.1 4710619..4713597(-) (uvrA) [Bradyrhizobium japonicum strain CNPSo 34]
ATGGATGAAGTGATCAAGGCGAAGCGCCAACAGCAGAACGCGGGATCCAGCCTGCGCGCAATTACGATCCGTGGCGCGCG
CGAGCACAACCTCAAGAATGTCGACGTCGAGATTCCCCGCGACAAGCTGGTGGTGTTCACGGGGCTGTCGGGCTCCGGCA
AATCCTCGCTCGCCTTCGACACCATCTATGCCGAGGGCCAGCGCCGCTACGTCGAATCGCTGTCGGCCTATGCGCGCCAG
TTCCTGGAGATGATGCAGAAGCCTGATGTCGACCAGATCGACGGCCTGTCGCCGGCGATCTCGATCGAGCAGAAGACGAC
CTCGAAGAACCCGCGCTCGACCGTCGGCACCGTCACCGAGATCTACGACTACATGCGCCTGCTCTGGGCGCGCGTCGGCG
TGCCCTATTCGCCCGCCACGGGCCTGCCGATCGAGAGCCAGACCGTCTCGCAGATGGTCGACCGCGTGCTGGCGCTGCCC
GAAGGCACCCGCCTCTATCTGCTCGCCCCCGTCGTGCGCGGCCGCAAGGGCGAGTACCGCAAGGAGCTCGCCGAATGGCT
CAAGAAAGGCTTTCAGCGCGTCAAGATCGACGGCACCTTCCATGAGCTCGCGGAGGCGCCGACGCTCGACAAGAAATTTC
CGCACGACATCGACGTCGTGGTCGACCGCATCGTGGTGCGCGCCGACATCGGCCAGCGCCTCGCCGAAAGCTTTGAGACC
GCGCTGAAGCTCGCGGAGGGCCTCGCCGTCGTCGAGTTCGCCGATGCGCCTGCAGCGGCTGCACCAGCCGAAGAAAAGAA
GAAGACCGCAAAAATCCACGACAAGAGCGGGCCCGAGCGCATCCTGTTCTCGGAAAAGTTCGCCTGTCCCGTCTCCGGCT
TCACGATCCCCGAGATCGAGCCGCGCCTGTTCTCGTTCAACAATCCCTACGGCGCCTGCCCGGCCTGCGGCGGCCTCGGC
GTCGAGCAGCATGTCGACGAAGACCTCGTCATCCCCGACAAGGAGCTCGCCATCGGCAAGGGCGCGATCGCGCCCTGGGC
CAAGTCGTCATCGCCCTACTACGTGCAGACGCTGACGGCGCTCGGCAAGCACTACAAGTTCACGCTGACCACCAAATGGA
AGGATCTGCCGAAGAAGACGCAGAACGCGATCCTCCTTGGCTCGGGCGAGGACGAGATCAAGTTCTCCTACGAGGACGGC
GTCCGCTCCTACGACACCAAGAAGCCGTTCGAGGGCGTCATCACCAACATCAACCGCCGCTATCGCGAGACCGAGAGCGA
GTGGGCGCGCGAGGAGCTCGCAAAATATTTCCACGACGTCCCCTGCGAGGGCTGCAAGGGTTTCCGGCTGAAGCCCGAGG
CGCTCTGCGTCAAGGTCGGCGGTAAGCATATCGGCGAGATTTCGGAGCTGTCGGTCAGGAAGGCCGGCGAATGGTTCGAG
ACCGTGCCCGAGGCGCTGAACACGCAGCAGAACGAGATCGCCGGCCGCATCCTCAAGGAGATCCGCGAGCGCCTCACCTT
CCTTCTCGACGTCGGCCTCAACTACCTCACCCTGTCCCGCTCCTCCGGCACGCTGTCCGGCGGCGAGAGCCAGCGCATCC
GCCTCGCCTCGCAGATCGGCTCGGGACTGACGGGCGTGCTCTACGTGCTGGACGAGCCCTCGATCGGCCTGCACCAGCGC
GACAACGCCCGCCTGCTCGACACCCTCAAGCGCCTGCGCGACCTCGGCAACACCGTGATCGTGGTCGAGCATGACGAGGA
CGCGATCCTGCTCGCCGACTACGTCCTCGACATCGGGCCCGGCGCCGGCATGCATGGCGGCAACATCGTCGCCGAAGGCA
CGCCCGCCGAGATCATGCGCAACCCTAAATCGCTCACCGGCAAGTACCTGACCGGCGAGCTCGAGGTCGAGGTGCCAGAG
CGGCGCCCGCCGAACCATCGCCGCACCATCAAGGTGGTCAACGCGCGCGGCAATAACCTCAAGAACGTCACGGCCGAAAT
TCCGCTCGGCCTGTTCACGGCCGTCACTGGCGTGTCCGGCGGCGGCAAGTCGACGCTGCTGATCGACACGCTCTACAAGG
CCATCGCCCGCAAGCTGAACGGCGCCAGCGAAGGCGCCGCACCCCACGATCGCATCGAGGGCCTCGAGCACATCGACAAG
ATCATCGACATCGACCAGTCGCCGATCGGCCGCACCCCGCGCTCGAACCCCGCGACCTACACCGGCGCCTTCACGCCGAT
CCGCGAATGGTTCGCCGGCCTGCCCGAAGCGAAGGCGCGCGGCTACGAGCCCGGCCGCTTCTCCTTCAACGTCAAGGGCG
GCCGCTGCGAGGCCTGCCAGGGCGACGGCGTCATCAAGATCGAGATGCACTTCCTGCCCGACGTCTACGTCACCTGCGAC
GTCTGCAAGGGCAAGCGCTACAACCGCGAGACGCTGGAGGTCCTGTTCAAGGGCAAGAGCATCGCCGACGTGCTCGACAT
GACCGTCGAGGAAGCCGCCGAGTTCTTCAAGGCGGTGCCGCGCGTGCGCGAGACTTTCCAGACGCTGCACCGCGTCGGCC
TCGACTATATCCATGTTGGCCAGCAGGCGACCACGCTCTCCGGCGGCGAAGCCCAGCGCGTCAAGCTCGCCAAGGAATTG
TCCAAGCGCGCCACCGGCCGCACGCTCTACATCCTGGACGAGCCGACCACCGGCCTGCACTTCCACGACGTCAAGAAGCT
CTTGGAGGTGCTGCACGAGCTGGTCGCCCAAGGCAATACGGTCGTCGTCATCGAGCACAATCTCGAAGTCATCAAGACCG
CCGACTGGGTCATCGACCTCGGCCCCGAAGGCGGCGACGGCGGCGGCGAGATCGTCGCCTGGGGCCCGCCGGAGGATATC
GCAAAGGCGCCAAGGAGCTATACCGGCAAATTCTTGGAGCCAGTGTTGAAGAAGGCGCGGAAGCCGAAGCGGCGGAGCAC
GAGCGAGGCGGCGGAGTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(147-254)

ABC transporter (ABC_tran)

(827-896)

UvrA DNA-binding domain (UvrA_DNA-bind)

(326-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

59.313

96.875

0.575
  uvrA Streptococcus pneumoniae TIGR4

59.313

96.875

0.575
  uvrA Streptococcus pneumoniae D39

59.313

96.875

0.575