Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QLX50_RS12665 Genome accession   NZ_CP125283
Coordinates   2611037..2611789 (-) Length   250 a.a.
NCBI ID   WP_044801615.1    Uniprot ID   -
Organism   Bacillus velezensis strain IFST-221     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2606037..2616789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS12640 (QLX50_12640) mreC 2606473..2607336 (-) 864 WP_044801617.1 rod shape-determining protein MreC -
  QLX50_RS12645 (QLX50_12645) mreB 2607367..2608380 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  QLX50_RS12650 (QLX50_12650) radC 2608472..2609167 (-) 696 WP_007408165.1 DNA repair protein RadC -
  QLX50_RS12655 (QLX50_12655) - 2609199..2609768 (-) 570 WP_012118105.1 Maf family protein -
  QLX50_RS12660 (QLX50_12660) - 2609909..2610910 (-) 1002 WP_044801616.1 SPOR domain-containing protein -
  QLX50_RS12665 (QLX50_12665) comC 2611037..2611789 (-) 753 WP_044801615.1 A24 family peptidase Machinery gene
  QLX50_RS12670 (QLX50_12670) - 2611929..2613221 (-) 1293 WP_045208378.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QLX50_RS12675 (QLX50_12675) - 2613280..2615922 (-) 2643 WP_044801613.1 valine--tRNA ligase -
  QLX50_RS12680 (QLX50_12680) - 2616375..2616566 (+) 192 WP_007612879.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27177.86 Da        Isoelectric Point: 9.4293

>NTDB_id=830630 QLX50_RS12665 WP_044801615.1 2611037..2611789(-) (comC) [Bacillus velezensis strain IFST-221]
MLLILFFLGLIFGSFFYTAACRIPLRISVVSPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFASKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=830630 QLX50_RS12665 WP_044801615.1 2611037..2611789(-) (comC) [Bacillus velezensis strain IFST-221]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTGTTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCTT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGCCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGTCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58