Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QLX50_RS11865 Genome accession   NZ_CP125283
Coordinates   2462092..2462859 (-) Length   255 a.a.
NCBI ID   WP_044802539.1    Uniprot ID   -
Organism   Bacillus velezensis strain IFST-221     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2457092..2467859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS11845 (QLX50_11845) - 2457293..2458105 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  QLX50_RS11850 (QLX50_11850) ccpN 2458131..2458769 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  QLX50_RS11855 (QLX50_11855) glyS 2458871..2460910 (-) 2040 WP_044802540.1 glycine--tRNA ligase subunit beta -
  QLX50_RS11860 (QLX50_11860) glyQ 2460903..2461790 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  QLX50_RS11865 (QLX50_11865) recO 2462092..2462859 (-) 768 WP_044802539.1 DNA repair protein RecO Machinery gene
  QLX50_RS11870 (QLX50_11870) - 2462896..2463039 (-) 144 WP_007408286.1 YqzL family protein -
  QLX50_RS11875 (QLX50_11875) era 2463195..2464100 (-) 906 WP_007408285.1 GTPase Era -
  QLX50_RS11880 (QLX50_11880) - 2464081..2464491 (-) 411 WP_003152976.1 cytidine deaminase -
  QLX50_RS11885 (QLX50_11885) - 2464615..2464989 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  QLX50_RS11890 (QLX50_11890) ybeY 2464970..2465443 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  QLX50_RS11895 (QLX50_11895) - 2465444..2467576 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=830623 QLX50_RS11865 WP_044802539.1 2462092..2462859(-) (recO) [Bacillus velezensis strain IFST-221]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=830623 QLX50_RS11865 WP_044802539.1 2462092..2462859(-) (recO) [Bacillus velezensis strain IFST-221]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATTGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894