Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QLX50_RS07260 Genome accession   NZ_CP125283
Coordinates   1389496..1389780 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain IFST-221     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384496..1394780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS07240 (QLX50_07240) - 1385737..1386645 (+) 909 WP_044801362.1 ketopantoate reductase family protein -
  QLX50_RS07245 (QLX50_07245) - 1386678..1387910 (-) 1233 WP_044801363.1 aminopeptidase -
  QLX50_RS07250 (QLX50_07250) - 1388011..1388145 (-) 135 WP_003154559.1 protein YkpC -
  QLX50_RS07255 (QLX50_07255) mreBH 1388217..1389224 (-) 1008 WP_038460721.1 cell shape-determining protein MreBH -
  QLX50_RS07260 (QLX50_07260) abrB 1389496..1389780 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QLX50_RS07265 (QLX50_07265) - 1389953..1391257 (+) 1305 WP_032874761.1 ATP-binding protein -
  QLX50_RS07270 (QLX50_07270) - 1391259..1392086 (+) 828 WP_044801364.1 gamma-glutamylcyclotransferase family protein -
  QLX50_RS07275 (QLX50_07275) ktrC 1392127..1392792 (+) 666 WP_038457872.1 Ktr system potassium transporter KtrC -
  QLX50_RS07280 (QLX50_07280) ade 1392941..1394674 (+) 1734 WP_044801365.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=830607 QLX50_RS07260 WP_003154557.1 1389496..1389780(+) (abrB) [Bacillus velezensis strain IFST-221]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=830607 QLX50_RS07260 WP_003154557.1 1389496..1389780(+) (abrB) [Bacillus velezensis strain IFST-221]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543